Pairwise Alignments

Query, 648 a.a., GGDEF domain protein from Pseudomonas putida KT2440

Subject, 728 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  117 bits (294), Expect = 1e-30
 Identities = 114/438 (26%), Positives = 199/438 (45%), Gaps = 23/438 (5%)

Query: 223 TEQAERSERLRAESYQDSLTGLSNRRYFEMQLNNRVSNLEDARAGYLLLLRVQGLAGLNA 282
           +E+   ++ L   +  D+LTGL NR +FE  L N + + +D     +  + V     +N 
Sbjct: 286 SEKYRLADELSFHANYDALTGLPNRLHFEALLENLL-HAKDDMPTCVAFIDVDQFQVINN 344

Query: 283 RLGGQRTDQLLQAVGEQLRRTCASYPETNDLISRSRGGEFAVLAPGMVHEEAVHLAQAL- 341
             G Q  D+LL  +  +L++         D+++R  G EF +L      + A H+A+ + 
Sbjct: 345 ISGHQAGDKLLCQLALRLKQLVRK----GDIVARLGGDEFGILMHYCNVDSAQHIAKRIC 400

Query: 342 --EATLQSLHETGASDIDPVACIGLAPFSPGDSP-QALLKLADEALARAENQPTPGW-VC 397
              AT + + E    ++     +G+A F+   S   A++  AD A   A+++   GW + 
Sbjct: 401 TQLATHEFIWENRCHNVS--VSMGIAKFNRSASDIYAVMSHADAACRLAKDKGRNGWHLY 458

Query: 398 LEQGVAAVAADSQHAWHERLDQAFINGHFELFFQPVIECASSQRVLHHKVISRLRDGQGE 457
             +        ++      +  A     FEL+FQ +      +  LH +V+ R+    G 
Sbjct: 459 STKDPKMTRLYTEMMASVDIVSALALNQFELYFQSIAPLNYDESGLHLEVLLRMVQPNGN 518

Query: 458 ALPAGRFLPWLERFGWMPRLDVLVLEKVLA----HLRGHDQV--LALNLSAATLADPKAL 511
            +    FLP  ER+    ++D+ V++ +L     HL    Q+  +++NLSA +L D + +
Sbjct: 519 IVSPAIFLPAAERYNLAAKIDLWVIDNLLKWGSNHLAIWQQLGLVSVNLSATSLGDSEFM 578

Query: 512 QRVFELLGQNAALGPRLVFEIGEEQLPEQAALEQLTRR---LHGLGFGLALQRFGGRFSM 568
             +   L     L  +L  EI E     Q  L+Q T+    L  L   LAL  FG  FS 
Sbjct: 579 NWLEMRLMTEPELVDKLCIEITETAAVSQ--LDQATKLIEVLRPLNCQLALDDFGAGFSS 636

Query: 569 IGNLAHLGLAYLKIDGSYIRNIDHEQHKRLFIEAIQRAAHSIDLPLIAERVETEGERLVL 628
              L  L + Y+KIDG ++ N+  +   +  ++AI +    +   ++AE VE+    L L
Sbjct: 637 FAYLKRLNVDYVKIDGQFVINLCEDGADQAIVKAICQLGQDMGFDVVAEFVESTEIGLKL 696

Query: 629 LEMGVGGIQGQLVGEPAP 646
             +GV   QG  + +P P
Sbjct: 697 KSLGVDYAQGYAINKPTP 714