Pairwise Alignments

Query, 448 a.a., Alginate biosynthesis transcriptional regulatory protein AlgB from Pseudomonas putida KT2440

Subject, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  270 bits (689), Expect = 9e-77
 Identities = 170/452 (37%), Positives = 246/452 (54%), Gaps = 24/452 (5%)

Query: 13  LVDDESAILRTFRYCLEDEGYSVATANSAAQAETLLQRQVFDLCFLDLRLGEDNGLDVLA 72
           +V+D +++   +R  L      +    +   A   + R+  DL  LDLRL +  G+DVL 
Sbjct: 1   MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLY 60

Query: 73  QMRIQAPWMRVVIVTAHSAIDTAVDAIQAGAADYLVKPCSPDQLRLATAKQLEVRQLSAR 132
            ++ ++P + +V +TAH +IDTAV+A++ GA D+L+KPC  D+LR+     +   + +++
Sbjct: 61  AVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAI---RKASK 117

Query: 133 LEALEGEIRKPKDGLDSHSPAMMAVLETARQVAITDANILILGESGTGKGELARAIHGWS 192
           L+       +   G    S  M AV  T    A + A+I I GESGTGK   A AIH  S
Sbjct: 118 LKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAAS 177

Query: 193 KRARKACVTINCPSLNAELMESELFGHTRGAFTGASESTLGRVSQADGGTLFLDEIGDFP 252
           KR  K  + INC ++  +L+ESELFGH +GAFTGA+    G    ADGGTLFLDE+ +  
Sbjct: 178 KRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMD 237

Query: 253 LTLQPKLLRFIQDKEYERVGDPVTRRADVRILAATNLNLEEMVRESRFREDLLYRLNVIT 312
           L LQ KLLRFIQ   +++VG    +  DVR + ATN +  + V+E RFREDL YRL VI 
Sbjct: 238 LDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIP 297

Query: 313 LHLPPLRERSEDILILADRFLARFVKEYSRPARGFSDEARTALLNYRWPGNIRELRNVVE 372
           LHLPPLR R +D++ +A   L    KE  +     S E       Y WPGN+R+L+NV+ 
Sbjct: 298 LHLPPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLR 357

Query: 373 RASIICPQERVEISHLGMGEQPAG--SAPRVGAALSLDELERAHI--------------- 415
             +++   E  EI+ L M   P    SAP +  AL L    +  +               
Sbjct: 358 --NVVVLNEGREIT-LDMLPPPLNQMSAP-INRALPLAHENKVSVHEIFPLWMTEKQAIE 413

Query: 416 GAVLAASDTLDQAAKTLGIDASTLYRKRKQYN 447
            A+ A    + +AA  L +  ST+YRK + +N
Sbjct: 414 QAIEACDGNIPRAATYLDVSPSTIYRKLQTWN 445