Pairwise Alignments

Query, 448 a.a., Alginate biosynthesis transcriptional regulatory protein AlgB from Pseudomonas putida KT2440

Subject, 513 a.a., sigma-54-dependent transcription regulator protein from Sinorhizobium meliloti 1021

 Score =  271 bits (693), Expect = 4e-77
 Identities = 189/506 (37%), Positives = 260/506 (51%), Gaps = 75/506 (14%)

Query: 11  ILLVDDESAILRTFRYCLEDEGYSVATANSAAQAETLLQRQ--VFDLCFLDLRLGEDNG- 67
           IL++DD+    R     +E  G+    A++      LLQR+  + ++  LDL + E NG 
Sbjct: 5   ILVIDDDPVQRRLLTNMIERLGHVAHLADNGRSGLELLQRKGGIINVILLDLLMPEMNGH 64

Query: 68  --LDVLAQMRIQAPWMRVVIVTAHSAIDTAVDAIQAGAADYLVKPCSPDQLRLATAKQLE 125
             L+ LA+  I  P   V++ T    I+T V A+QAGA D+LVKP SP++L +A    L+
Sbjct: 65  GLLEALAERGIDIP---VIVQTGQGGIETVVQAMQAGAFDFLVKPVSPERLSIALGNALK 121

Query: 126 VRQLSARLEALEGEIRKPKDG------LDSHSPAMMAVLETARQVAITDANILILGESGT 179
           +     +++      R+P+ G      + S SPAM+ V++ AR+ A ++  I++ GESG 
Sbjct: 122 MASRDGKVKTA----RRPRGGAVGFDDIVSASPAMIRVIDLARRAAQSNIPIVLEGESGV 177

Query: 180 GKGELARAIHGWSKRARKACVTINCPSLNAELMESELFGHTRGAFTGASESTLGRVSQAD 239
           GK  +ARAI   S RA K  VT+NC ++   L+ES LFGH +GAFTGASE   G+   AD
Sbjct: 178 GKEMVARAIQAASDRAAKPFVTVNCGAIPHNLVESILFGHEKGAFTGASEKHSGKFVDAD 237

Query: 240 GGTLFLDEIGDFPLTLQPKLLRFIQDKEYERVGDPVTRRADVRILAATNLNLEEMVRESR 299
           GGTLFLDEIGD PL +Q KLLR +Q  E E +G    ++ +VR+++ATN +L   VRE R
Sbjct: 238 GGTLFLDEIGDLPLDVQVKLLRAVQQGEIETIGARQPQKVNVRLISATNKDLITEVREGR 297

Query: 300 FREDLLYRLNVITLHLPPLRERSEDILILADRFLARFVKEYSRPAR-GFSDEARTALLNY 358
           FREDL YRLNV  + +P LR R EDI +L   F+ RF  E     R   S  A   L +Y
Sbjct: 298 FREDLYYRLNVFPITIPALRRRKEDIPVLVRAFVERFSAEQRLDQRLTVSSGAMALLTSY 357

Query: 359 RWPGNIRELRNVVERASIIC----------PQERVEI----------------------- 385
            WPGNIR+L N + RA ++           PQ   +I                       
Sbjct: 358 DWPGNIRQLENAIFRAVVLADGHELTVRDFPQVATQIPGYIVADRSGLSWGEAGPERRPA 417

Query: 386 --------SHLGMGEQPA--------------GSAPRVGAALSLDELERAHIG-AVLAAS 422
                   +  G  EQPA               S    G    L E+E   I  A+    
Sbjct: 418 SGQLAAAQADAGAREQPAHSEQTPEGRLENAIASLSEGGEVRKLAEVEEELIRFALKFYR 477

Query: 423 DTLDQAAKTLGIDASTLYRKRKQYNL 448
             + Q A+ LGI  STLYRK K Y +
Sbjct: 478 GQMSQVARKLGIGRSTLYRKLKDYGI 503