Pairwise Alignments

Query, 448 a.a., Alginate biosynthesis transcriptional regulatory protein AlgB from Pseudomonas putida KT2440

Subject, 478 a.a., Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) from Rhodospirillum rubrum S1H

 Score =  286 bits (733), Expect = 8e-82
 Identities = 186/465 (40%), Positives = 250/465 (53%), Gaps = 28/465 (6%)

Query: 10  RILLVDDESAILRTFRYCLEDEGYSVATANSAAQAETLL--QRQVFDLCFLDLRLGEDNG 67
           RIL+V+D  +    +   L   G +V  A +  QA   L      FDL  LDL L + +G
Sbjct: 3   RILMVEDSPSNAELYATYLRASGMTVTLAGTGGQALDYLVADASAFDLVVLDLGLPDMDG 62

Query: 68  LDVLAQMRIQAPWMRVVIVTAHSAIDTAVDAIQAGAADYLVKPCSPDQLRLATAKQLEVR 127
           L++L ++   A     V++T   ++  AV+A++ GA D+LVKPC  D+LR A  + LE R
Sbjct: 63  LEILRKLGGPAAMPPTVVLTGSGSVRRAVEAMREGAIDFLVKPCGADKLRTAVEEALERR 122

Query: 128 QLSARLEALEGEIRKPK---DGLDSHSPAMMAVLETARQVAITD-ANILILGESGTGKGE 183
             +A   A   +  + K    G    SPAM  V       A +  A++ I GE+GTGK  
Sbjct: 123 TPTAEGRAPAADPTRAKRGPSGFLGSSPAMSNVFSLIEAAAASSTASVFITGETGTGKEL 182

Query: 184 LARAIHGWSKRARKACVTINCPSLNAELMESELFGHTRGAFTGASESTLGRVSQADGGTL 243
            A AIH  S R     V INC ++  ELMESE+FGH +GAFTGA     G  S+ADGGTL
Sbjct: 183 CANAIHNLSDRRNGPFVAINCGAIPRELMESEIFGHRKGAFTGAINDREGAASRADGGTL 242

Query: 244 FLDEIGDFPLTLQPKLLRFIQDKEYERVGDPVTRRADVRILAATNLNLEEMVRESRFRED 303
           FLDE+ +  L LQ KLLRFIQ   Y +VGD   R+ ++R + ATN +    V+  RFRED
Sbjct: 243 FLDELCEMDLDLQVKLLRFIQTGTYRKVGDGADRQVNIRFVCATNRDPLVEVKAGRFRED 302

Query: 304 LLYRLNVITLHLPPLRERSEDILILADRFLARFVKEYSRPARGFSDEARTALLNYRWPGN 363
           L YRL V+ +HLPPL  R +DI++LA RFLA F K   +  + FS +A   ++ YRWPGN
Sbjct: 303 LYYRLYVVPIHLPPLSARGDDIILLARRFLADFSKLEGKRFQEFSADALGRIMAYRWPGN 362

Query: 364 IRELRNVVERASIICPQERVE-------------ISHLGMGEQPAGSAPRVGAALSLD-- 408
           +R+L NVV    ++     VE             +  L +  Q A  A   G  LSLD  
Sbjct: 363 VRQLENVVRNIVVLNDGVTVEPTMLPPPLDCVEAVVSLPVDPQSATGAVVGGGTLSLDEI 422

Query: 409 ------ELERAHIGAVLAASD-TLDQAAKTLGIDASTLYRKRKQY 446
                 ELE   I A L  SD  + +AA+ L +  ST+YRK   Y
Sbjct: 423 LARPLAELEAMAIDAALRLSDNNVTRAARLLDVSPSTIYRKHSAY 467