Pairwise Alignments

Query, 448 a.a., Alginate biosynthesis transcriptional regulatory protein AlgB from Pseudomonas putida KT2440

Subject, 452 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  312 bits (799), Expect = 2e-89
 Identities = 182/448 (40%), Positives = 261/448 (58%), Gaps = 13/448 (2%)

Query: 11  ILLVDDESAILRTFRYCLEDEGYSVATANSAAQAETLLQRQVFDLCFLDLRLGEDNGLDV 70
           +LLV+DE ++L   ++ L   GY VATA  A +A+ LL+++ FDL   DLRL   NG+++
Sbjct: 6   VLLVEDELSMLLGMQHALSQAGYEVATAGDAEKAQQLLRQRPFDLVITDLRLPGMNGMEL 65

Query: 71  LAQMRIQAPWMRVVIVTAHSAIDTAVDAIQAGAADYLVKPCSPDQLRLATAKQLEVRQLS 130
           L  +    P   V+++TA   ++ AV AI+AGA D+L KP   D L +A  +      L 
Sbjct: 66  LEGICELYPGTGVILITAFPEVELAVQAIKAGAFDFLCKPFPRDGLLIAVERYFRFLDLK 125

Query: 131 ARLEALEGEIRKPKDGLDSHSPAMMAVLETARQVAITDANILILGESGTGKGELARAIHG 190
                L GE  +        SP M+ V E  R +A +   +L+LG SG+GK  +A A+H 
Sbjct: 126 RENARLRGE--RDDGEFIGESPMMLKVFERIRAIAGSCVPVLVLGPSGSGKELVAGALHR 183

Query: 191 WSKRARKACVTINCPSLNAELMESELFGHTRGAFTGASESTLGRVSQADGGTLFLDEIGD 250
            SKR  K  + INC +L   L+ESELFGH +GAFTGA ++  G+   ADGGTLF DE G+
Sbjct: 184 LSKRRDKPFIKINCAALPEHLLESELFGHEKGAFTGAQQARKGKFEAADGGTLFFDEAGE 243

Query: 251 FPLTLQPKLLRFIQDKEYERVGDPVTRRADVRILAATNLNLEEMVRESRFREDLLYRLNV 310
            PL +Q KLLR ++D+E   VG  + R+ DVR + AT  +LEE +    FREDL YR+NV
Sbjct: 244 MPLAVQAKLLRVLEDQEVTPVGGNMPRKVDVRTVFATARDLEEAIGAGTFREDLYYRINV 303

Query: 311 ITLHLPPLRERSEDILILADRFLARFVKEYSRPARGFSDEARTALLNYRWPGNIRELRNV 370
           + + LPPLRER  D+ +LA+RFL RF  ++ R    FS++AR ALL Y +PGN+RELRN 
Sbjct: 304 VPVTLPPLRERGGDVALLAERFLRRFCAQHDRQVT-FSEQARNALLAYDYPGNVRELRNA 362

Query: 371 VERASIICPQERVEISHL---------GMGEQPAGSAPRVGAALSLDELERAHI-GAVLA 420
           +ERA I+C ++++ + HL            EQ       V  A  + + E+  I  A+  
Sbjct: 363 IERAVILCAEDKIHVGHLPKRIRDATQASQEQQPEETRFVQLADGVAQFEKKRILEALQK 422

Query: 421 ASDTLDQAAKTLGIDASTLYRKRKQYNL 448
                 +AA+ LGI    L+ K K+ ++
Sbjct: 423 TGGRRIRAAELLGITRKQLWLKLKELDI 450