Pairwise Alignments

Query, 448 a.a., Alginate biosynthesis transcriptional regulatory protein AlgB from Pseudomonas putida KT2440

Subject, 472 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  311 bits (798), Expect = 2e-89
 Identities = 186/464 (40%), Positives = 260/464 (56%), Gaps = 25/464 (5%)

Query: 10  RILLVDDESAILRTFRYCLEDEGYSVATANSAAQAETLLQRQVFDLCFLDLRLGEDNGLD 69
           RIL++DDE  I  + R  LEDEG+ V  A         L     D+ FLD+ +   +GL 
Sbjct: 4   RILIIDDEDDIRFSLRGILEDEGHEVTEAPDGEAGLRTLASDTPDVVFLDIWMPGMDGLT 63

Query: 70  VLAQMRIQAPWMRVVIVTAHSAIDTAVDAIQAGAADYLVKPCSPDQLRLATAKQLEVRQL 129
           VL  +   AP + V++++ H  I+TAV AI+ GA D++ KP S +++ +A  + LE+R+L
Sbjct: 64  VLEHIHAAAPSLPVIMISGHGTIETAVAAIKKGAHDFIEKPLSLEKVVIAAERALEMREL 123

Query: 130 SARLEALEGEIR--KPKDGLDSHSPAMMAVLETARQVAITDANILILGESGTGKGELARA 187
               +AL   +      D L   S  M  + E   +VA TDA +LI GE+GTGK   ARA
Sbjct: 124 RRENQALRSSLGAGSKADELIGESAPMRRIREQIARVAPTDAWVLITGENGTGKELAARA 183

Query: 188 IHGWSKRARKACVTINCPSLNAELMESELFGHTRGAFTGASESTLGRVSQADGGTLFLDE 247
           +H  S+RA +  V +NC ++  EL+ESELFGH +GAFTGA  +  G+   A  GTLFLDE
Sbjct: 184 VHAGSQRATRPLVAVNCAAIPEELIESELFGHEKGAFTGAESARTGKFEMAHRGTLFLDE 243

Query: 248 IGDFPLTLQPKLLRFIQDKEYERVGDPVTRRADVRILAATNLNLEEMVRESRFREDLLYR 307
           IGD  L  Q K+LR +Q++ +E+VG   T R DVR++AATN NLEE + +  FREDL YR
Sbjct: 244 IGDMSLKTQAKILRILQEQSFEKVGGTRTIRVDVRVVAATNKNLEEQIAQGTFREDLYYR 303

Query: 308 LNVITLHLPPLRERSEDILILADRFLARFVKEYSRPARGFSDEARTALLNYRWPGNIREL 367
           L V  L LP LRER +DIL L D F+ R  ++++     F+D+A+  LL YRWPGN+REL
Sbjct: 304 LRVFPLSLPALRERGDDILRLLDAFMLRLCRDHAFAPLTFTDDAQDVLLRYRWPGNVREL 363

Query: 368 RNVVERASIICPQERVEISHL----------------GMGEQPAGSAPRVGAALSLD--- 408
           RN VER  I+   E V++  L                G   Q A +    G    LD   
Sbjct: 364 RNFVERMLILHAGESVDVEDLPPECLRDLSPSSDSATGTAAQSATATCGTGVDGILDFKA 423

Query: 409 ---ELERAHIGAVL-AASDTLDQAAKTLGIDASTLYRKRKQYNL 448
                E   +   L      + + A+ +G++ S L+RK K Y +
Sbjct: 424 ARNAFETRFLAEQLQECGGNVSRLAERIGLERSHLHRKLKGYGI 467