Pairwise Alignments

Query, 593 a.a., Alginate biosynthesis sensor protein KinB from Pseudomonas putida KT2440

Subject, 856 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  157 bits (398), Expect = 1e-42
 Identities = 117/371 (31%), Positives = 183/371 (49%), Gaps = 17/371 (4%)

Query: 236 MADALRKHQATNVDELLAGQQRLQAVLDSIDDGLLIIDRQGRLEHLNPVAQRQLGWN--- 292
           MA+ + +H   +  +L   ++RL   L   +DGL  +D      + +P A   LG+    
Sbjct: 351 MAEEMTRHIRQSRHDLRLSEERLSLALKGSNDGLWDLDLDAGSMYASPRAWEILGYRPNE 410

Query: 293 ---DSRLGSSLVEALQRPELEQQLRQVLRGGSLDRPPDDLNMEVDEESRLLTYSLTPVSH 349
              D +L   +  A    + + +L Q +   ++D    +L ++  +   ++   L     
Sbjct: 411 LTCDLKLWERVTVAEDLAQQKARLAQTMLS-NVDHFTTELRLQ-HKHGHVVPVLLRGYIQ 468

Query: 350 --PQGPILGAVMVLHDVTEQRAFERVRSEFVLRASHELRTPVTGMHMAFGLLRERVKFPP 407
              QG        L D+TE++  E+++++FV   SHELRTP+T +  A GL+        
Sbjct: 469 RDAQGMAQRISGTLMDLTERKRVEQMKNDFVSTVSHELRTPLTSISGALGLIVGGALGSA 528

Query: 408 EARENDLLETIGEEMQRLTQLINDLLNFSRYQSGLQKLELAPCAIDDLLDHAQSRFAEQA 467
            A    +LE       RL  LINDLL+  +  +G    EL   ++ DLL+  +S  + QA
Sbjct: 529 PASMQQMLEIAYRNSLRLGHLINDLLDMEKIAAGKMSFELREHSLGDLLE--ESLASNQA 586

Query: 468 AHKQIELIKELDPPLP-RIQADVAQLDRVLDNLLHNAIRHTANGGRIRLHARRHAERVII 526
             +Q  +   LD P+   +  D  +L +VL N L NA++ T  GG IRLH+     RV I
Sbjct: 587 LCEQHGIRCSLDHPVDVLVWVDGMRLQQVLGNFLSNAVKFTPQGGEIRLHSSLRGPRVRI 646

Query: 527 SVEDNGEGISYGQQARIFEPFVQV----GRKKGGAGLGLALCKEIVQLHGGRMGVFSRPG 582
           SV D G GI    ++R+FE F Q      R+K G GLGLA+ KE+++  GG +G    PG
Sbjct: 647 SVTDQGPGIPEAFRSRVFEKFAQADASDSRQKSGTGLGLAITKELIERMGGTVGFDCPPG 706

Query: 583 QGTQFYMALPV 593
           QGT F+  LP+
Sbjct: 707 QGTTFWCELPI 717