Pairwise Alignments

Query, 593 a.a., Alginate biosynthesis sensor protein KinB from Pseudomonas putida KT2440

Subject, 1765 a.a., sensory box histidine kinase/response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  140 bits (354), Expect = 3e-37
 Identities = 102/370 (27%), Positives = 190/370 (51%), Gaps = 30/370 (8%)

Query: 249  DELLAGQQRLQAVLDSIDDGLLIIDRQGRLEHLNPVAQRQLGWNDSRLGSS----LVEAL 304
            +EL   +   +A+ D    G++ +D +G +   N      +G +   L S+    ++ A 
Sbjct: 897  EELAVSEAHFKALFDGATIGIVNVDIKGLILDCNYQFCEDMGLSRDELRSTPIFDVLSAQ 956

Query: 305  QRPELEQQLRQVLRGGSLDRPPDDLNMEVDEESRLLTYSLTPVSHPQGPILGAVMVLHDV 364
             +   + Q ++++ G       +   +    E   +T +++ +   Q     AV+ + D+
Sbjct: 957  DKDVAKAQFKELVEGKIDHYRGERSFVRPSGEPLWMTVNVSTLLDSQNQFESAVVSMVDM 1016

Query: 365  TEQR--------------AFERVRSEFVLRASHELRTPVTGMHMAFGLLRERVKFPPEAR 410
            TE +              A  + + +F+   SHE+RTP   M+   G+ +  ++   + +
Sbjct: 1017 TELKLLSDELLVAKDEADAASKAKGDFLANMSHEIRTP---MNAIIGMSQLCLQTQLDKK 1073

Query: 411  ENDLLETIGEEMQRLTQLINDLLNFSRYQSGLQKLELAPCAIDDLLDHAQSRFAEQAAHK 470
            + + LE I    Q L  +IND+L+FS+ ++G   +E     +D +L+     F+E+AA K
Sbjct: 1074 QKNYLEKIERASQSLLSIINDILDFSKIEAGKLDIENVSFQLDTMLEDLSDMFSERAAQK 1133

Query: 471  QIELIKELDPPLPR-IQADVAQLDRVLDNLLHNAIRHTANGG---RIRLHARRHAERVI- 525
            QIEL+  + P +PR +  D  +L +VL NL++NAI+ T  G     + L  +++ + V+ 
Sbjct: 1134 QIELLFAVAPNVPRHLLGDPLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQQNDDVVLR 1193

Query: 526  ISVEDNGEGISYGQQARIFEPFVQVG----RKKGGAGLGLALCKEIVQLHGGRMGVFSRP 581
             SV D+G G++  QQ+++F+ F Q      RK GG GLGLA+ K++V+L GG +GV S+ 
Sbjct: 1194 FSVRDSGIGLTQEQQSKLFKSFTQADTSTTRKYGGTGLGLAISKQLVELMGGSIGVESQL 1253

Query: 582  GQGTQFYMAL 591
            G G+ F+  +
Sbjct: 1254 GHGSTFFFTV 1263



 Score = 47.0 bits (110), Expect = 7e-09
 Identities = 48/208 (23%), Positives = 92/208 (44%), Gaps = 15/208 (7%)

Query: 168 LVSGVLGLMGLVVLVLGFITAHNIARRFGQPIEALAKAADQLGKGNF-DVTLPVTQAAEL 226
           + S +L L  L +L+L  +T +  A+R  +P+EAL       G+G   ++T+P    +E+
Sbjct: 307 IASAILNLSLLTLLLL--LTCYIAAKRLTRPLEALESGILAFGQGKAQELTIPKGAVSEI 364

Query: 227 NQLTRRFGLMADALRKHQATNVDELLAGQQRLQAVLDSIDDGLLI--IDRQGRLEHLNPV 284
             L+  F  MA  L + +   +D   +   R   ++D + D      +D  G+L  ++  
Sbjct: 365 VTLSETFNQMAALLAEREQAILD---SRGNRFARLIDGMSDKSFYCSLDPDGQLAQVSEG 421

Query: 285 AQRQLGWNDSRLGSSLVEALQRPELEQQLRQ----VLRGGSLDRPPDDLNM-EVDEESRL 339
             + LG     L            L ++  +     L+G ++  PP  + + +   ++R 
Sbjct: 422 VTKVLGIPPELLKRKYQRLFSANPLNEKNWEYTDLALKGQNV--PPHQIELVDAKGQARR 479

Query: 340 LTYSLTPVSHPQGPILGAVMVLHDVTEQ 367
           L   + P+    G ++   M+  DVTEQ
Sbjct: 480 LDVFMQPLVSDTGELMSVEMLFTDVTEQ 507