Pairwise Alignments

Query, 262 a.a., 1,6-anhydro-N-acetylmuramyl-L-alanine amidase from Pseudomonas putida KT2440

Subject, 241 a.a., AmpD (negative regulator of AmpC) (NCBI) from Rhodospirillum rubrum S1H

 Score =  159 bits (401), Expect = 7e-44
 Identities = 99/237 (41%), Positives = 136/237 (57%), Gaps = 25/237 (10%)

Query: 32  SANQDNR-----IQFVVLHYTNA-SLERSLALLT--HGEVSSHYLIGDGPATVYQLVDEN 83
           S N D+R     I  +V+HYT   S + +LA L     +VS+H+LI D   T Y+LV+E 
Sbjct: 17  SPNADDRPPGQIIDMLVIHYTGMPSAQAALARLLDPQAQVSAHWLI-DEDGTAYKLVEER 75

Query: 84  RRAWHAGESQWQGRTWLNSSSIGIEIVNPGFTDTPNGRVWHPYSEAQVQALIALLKDIVK 143
           RRAWHAG S W GR  +N+ SIGIE+VNPG         + P+ EAQ+  LIAL + I++
Sbjct: 76  RRAWHAGVSAWGGRPGVNARSIGIELVNPGHEFG-----YRPFPEAQMTTLIALGRGILE 130

Query: 144 RNNIEPRHIIGHSDIAPLRKLDPGPLFPWKRLADAGLGIWPDANAVARQQAYFSVNPPSV 203
           R+ I   H++GH+D+AP RK DPG LF W+RLA  G+G WP             V P +V
Sbjct: 131 RHPIPAAHVVGHADVAPTRKEDPGELFDWQRLASNGIGRWPPPP--------LGVRPETV 182

Query: 204 GWYQQELARFGYQIEQTGVLDVATRHVVAAFQMRFRPQRFDGMPDAQTAAMLQVLNR 260
              + E A     +EQ G    + +  V AFQ  FRP+R DG  D++T  +++ L R
Sbjct: 183 DATEGEAACL---LEQIGYDISSLQATVLAFQRHFRPKRLDGRIDSETLWLIKALAR 236