Pairwise Alignments

Query, 645 a.a., GGDEF domain protein from Pseudomonas putida KT2440

Subject, 518 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  181 bits (458), Expect = 9e-50
 Identities = 109/349 (31%), Positives = 187/349 (53%), Gaps = 6/349 (1%)

Query: 295 VEPPYSQVAAHIEQTLIGLLDDLSLPERHKAQAQEMRERVARGLNWYELIPVLDDLAVLM 354
           V P + Q+A  + Q    ++ ++   +  + Q   ++E +A  +    L+     +  L+
Sbjct: 171 VLPKHRQLAHELAQ----MISEIEFRKDQRDQVLVIKEMLASDIEIDNLLEAYQTILSLL 226

Query: 355 LAITDSGQHEFETYLQQLNERLEGFQSHLHEASAGHADNSTAARELDSQLREHVDGLQSS 414
           L      +   + +L  LN+ L   +  + E+   +  +     +L+ ++   VD +  +
Sbjct: 227 LDNIAREKSASQEFLYALNDALAAVREVVSESYNHNQRSFQLKTQLNREINSRVDNVGEA 286

Query: 415 VQGAADVDSLKHILENRLEGLLVTMDEHKHERDRREQELAGR-LQGLSERVASMEHEALG 473
           +    D+  LK  L  +L  +   +   K   ++REQ L  + ++ + + +  + +EA  
Sbjct: 287 IIDTDDIVDLKARLTEQLNSIRSAL-ARKETLEQREQALLRKSMETMRKELNELSNEANT 345

Query: 474 YREHLEEQRQKALLDPLTGLPNRAAWSERVEREMLDWQENGGHLAMAILDLDHFKRINDN 533
           Y+E L EQ++  LLD LT LPNRAA  ER+E E  ++Q +   L +A+ D+DHFK IND+
Sbjct: 346 YKERLFEQQKLNLLDSLTQLPNRAALEERMELEYRNYQRHKSPLWIAVADIDHFKIINDS 405

Query: 534 YGHLAGDKVLKIVADQLRKRLRGRDFIARFGGEEFVMLLPQTTPAVAAQVAEVLRATVEA 593
           +GH  GDK L+++A  L+  LR  +F+AR+GGEEFV++LP    +  AQ+   +R  V+ 
Sbjct: 406 FGHSTGDKTLQVIAMALKNSLRDTEFVARYGGEEFVLILPDIDDSDIAQLLNRVREKVKN 465

Query: 594 CPFHFKGERVVITTSIGLGAFRSGERSDQVLKRADAALYRAKELGRNRV 642
            PF FK +R+ +T SIG       E   +  +RADAALY+AK   R+RV
Sbjct: 466 IPFKFKNQRITVTVSIGAARVMGNELIHETFERADAALYKAKHESRDRV 514