Pairwise Alignments

Query, 915 a.a., DNA polymerase I, 5 from Pseudomonas putida KT2440

Subject, 934 a.a., DNA polymerase I from Vibrio cholerae E7946 ATCC 55056

 Score = 1086 bits (2808), Expect = 0.0
 Identities = 554/932 (59%), Positives = 705/932 (75%), Gaps = 26/932 (2%)

Query: 5   PLVLVDGSSYLYRAFHALPPLTTSKGMPTGAVKGVLNMLKSLRKQYPDSLFAVVFDAKGG 64
           PL+L+DGSSYLYRAFHA P   ++  +PT A+ GV+NM++S+ +Q+     AV+FDAKG 
Sbjct: 8   PLILIDGSSYLYRAFHAYPGTMSNGEIPTNAIYGVVNMIRSMMRQFASDRMAVIFDAKGK 67

Query: 65  TFRDAMFAEYKANRPSMPDDLRVQIEPLHASVKALGYPLLCVEGVEADDVIGTLARSSAA 124
           TFRD M+ +YKA+RP MPD+LR Q+EPLH  ++A+G PLL +EGVEADDVIGTLAR ++ 
Sbjct: 68  TFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQASQ 127

Query: 125 LGRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVHEKFGVGPEHIIDFLALMGDKV 184
            G PV+ISTGDKDMAQLVD +ITL+NTMT  VLD  GV EKFG+ PE IID+LALMGDKV
Sbjct: 128 AGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGDKV 187

Query: 185 DNIPGVPGVGEKTAVGLLTGIGGGLSDLYANLDKVPALAIRGAKTLPAKLEEHRDAAFLS 244
           DNIPGVPGVGEKTA  LL GIGG L  LYANLDK+ AL  RG+KT+  KLEE+R  A LS
Sbjct: 188 DNIPGVPGVGEKTATALLQGIGG-LEALYANLDKIAALGFRGSKTMAQKLEENRGNAKLS 246

Query: 245 YELATIKVDVPLDVEVEALVCGEPDREALLALYTEMEFKSWVAELQRD------------ 292
           Y+LATIK DV L+   + L+   PDR+AL++LY ++ FKSW+ EL               
Sbjct: 247 YQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAFKSWLTELLDGGTGIVTADEQTK 306

Query: 293 ------AAKAGDDVAPAVEPAVKVE-AKYETILDQARFDAWLEKLRQAPLFAFDTETTGL 345
                 +  A    A    PA  ++ ++Y+TIL++  F  WLEKL+QA LFAFDTET  L
Sbjct: 307 TSSVTVSTAATHAAAIPESPAAHIDRSQYQTILNEQDFQLWLEKLKQAELFAFDTETDNL 366

Query: 346 DAQQAQLVGLSFAVEPHEAAYVPLAHDYEGAPVQLDREAVLLALKPLLEDPAKAKVGQNA 405
           D   A LVG+SFAV   EAAY+P+AHDY  AP QL+R+ V+  LKPLLED +KAKVGQN 
Sbjct: 367 DYMVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVIAQLKPLLEDESKAKVGQNL 426

Query: 406 KYDINILANGSPAIEMRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHTTIAFEDIAGK 465
           KYD +++A     +E+RG+ +DTML+SYV NS   +HDMDSLA ++L H+ I+FE +AGK
Sbjct: 427 KYDASVMARYG--VELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGK 484

Query: 466 GAKQLTFNQINLDKAGPYAAEDADITLRLHHALQARLAQTPSVQPVLMDIEMPLVPVLAR 525
           G  QLTFNQI L++A  YAAEDAD+TLRLH  +   + Q   ++ V  +IEMPLVPVL+R
Sbjct: 485 GKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVLSR 544

Query: 526 IERQGALVDAELLKVQSGELGVKMAELELRAYELAGETFNLGSPKQLGTILYDKLGMPVL 585
           IER G ++D  LL  QS E+ +++ +LE  AYELAG+ FNL SPKQL TIL++++ +PVL
Sbjct: 545 IERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLSSPKQLQTILFEQMKLPVL 604

Query: 586 SKTAKGQPSTAEAVLDELALQGYPLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTS 645
            KT  G PST E VL ELAL  YPLP+VL++YR L+KLKSTYTDKLP  INP TGR+HTS
Sbjct: 605 QKTPSGTPSTNEEVLQELALD-YPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTS 663

Query: 646 YQQAVAATGRLSSSDPNLQNIPIRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAHLA 705
           Y QAV ATGRLSS+DPNLQNIP+R  EGRRIRQAF+A  G+K++A DYSQIELRIMAHL+
Sbjct: 664 YHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 723

Query: 706 KDEGLLHAFRNDLDVHRATAAEVFGVALEDVTTDQRRSAKAINFGLIYGMSAFGLAKQIG 765
            D+ LL AFR+  D+H ATAAE+ GV ++ V+++QRR AKA+NFGLIYGMSAFGLAKQ+G
Sbjct: 724 GDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLG 783

Query: 766 VDRKQSQDYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPDINAKNPALRKG 825
           + R ++Q+Y+D+YF RYPGV+ YME TR++AA+ G+VET+FGRRL+LP+I ++N   RK 
Sbjct: 784 IPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITSRNAMRRKA 843

Query: 826 AERTAINAPMQGTAADIIKRAMVKVDNWLSESGLDARV--ILQVHDELVLEVREDLVQQV 883
           AER AINAPMQGTAADIIK+AM+ VD W+   G D RV  ++QVHDELV EV+E  + ++
Sbjct: 844 AERAAINAPMQGTAADIIKKAMLLVDEWIEREG-DGRVKLLMQVHDELVFEVKESSLSEI 902

Query: 884 KDEIRQHMSQAAQLDVPLLVEAGVGANWDEAH 915
           + +++Q M  AA+L VPL+ EAG G NW++AH
Sbjct: 903 ESKVQQLMESAAELAVPLVAEAGHGDNWEQAH 934