Pairwise Alignments

Query, 915 a.a., DNA polymerase I, 5 from Pseudomonas putida KT2440

Subject, 924 a.a., DNA polymerase A (NCBI) from Rhodospirillum rubrum S1H

 Score =  699 bits (1805), Expect = 0.0
 Identities = 410/931 (44%), Positives = 560/931 (60%), Gaps = 34/931 (3%)

Query: 6   LVLVDGSSYLYRAFHALPPLTTSKGMPTGAVKGVLNMLKSLRKQYPDSLFAVVFDAKGGT 65
           L LVDGS Y++RA+H+LPP+T + G P  AV G   ML  L         AV+FD    +
Sbjct: 7   LYLVDGSGYIFRAYHSLPPMTRTDGTPVNAVYGFTAMLMKLLADMDADHLAVIFDKARVS 66

Query: 66  FRDAMFAEYKANRPSMPDDLRVQIEPLHASVKALGYPLLCVEGVEADDVIGTLARSSAAL 125
           FR+ ++  YKA RP  P+DL  Q   +  +V+A   P +  +G EADD+I T A+ + A 
Sbjct: 67  FRNEIYPLYKAQRPPPPEDLIPQFPLIREAVRAFNVPCIERDGFEADDLIATYAKRARAE 126

Query: 126 GRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVHEKFGVGPEHIIDFLALMGDKVD 185
           G  V + + DKD+ QLV   + L + M    +  A V EKFGV P+ +ID  AL GD VD
Sbjct: 127 GAIVTVVSSDKDLMQLVGEGVALFDPMKNRAIGPAEVFEKFGVAPDKVIDVQALAGDAVD 186

Query: 186 NIPGVPGVGEKTAVGLLTGIGGGLSDLYANLDKVPALAIRGAKTLPAKLEEHRDAAFLSY 245
           N+PGVPG+G KTA  L+ G  G L  L A      A  I+  K   + L+ H +AA +S 
Sbjct: 187 NVPGVPGIGVKTAAQLI-GEYGDLETLLAR-----AAEIKQPKRRQSLLD-HAEAARISL 239

Query: 246 ELATIKVDVPLDVEVEALVCGEPDREALLALYTEMEFKSWVAELQRDA-AKAGDDVAPAV 304
           +L  ++ DV +   +      EPD E L     E  F+S +A +   A AKAG    PA 
Sbjct: 240 QLVRLRDDVEVSETLADFATAEPDAEVLAGFLAENGFRSLLARVTAVAHAKAGTTPQPAA 299

Query: 305 EPAVKVEAKYETILDQARFDAWLEKLRQAPLFAFDTETTGLDAQQAQLVGLSFAVEPHEA 364
            PA   +  Y  +   A    W+ K R A L A DTET  L A++A LVG+S A+ P  A
Sbjct: 300 APA---DDDYVLVNTLAELGVWIAKARAAGLVAIDTETDSLKARRATLVGVSLAITPGRA 356

Query: 365 AYVPLAH--------DYEGAPVQL----DREAVLLALKPLLEDPAKAKVGQNAKYDINIL 412
            Y+P AH        D++GA   +    D+ A L  L  LL DP   KVG N K+D+++L
Sbjct: 357 CYIPFAHGLRKAEGLDFDGAAPPVANIEDKAAALALLGDLLRDPGVLKVGHNLKFDLHVL 416

Query: 413 ANGSPAIEMRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHTTIAFEDIAGKGAKQLTF 472
           AN    +       DTM+ SYVL+ T   H MD LA  +L   TI FE++ GKG  Q+TF
Sbjct: 417 ANAG--LSDVAPVDDTMVLSYVLDGTLHGHGMDELAGLHLGRRTITFEEVCGKGKGQITF 474

Query: 473 NQINLDKAGPYAAEDADITLRLHHALQARLAQTPSVQPVLMDIEMPLVPVLARIERQGAL 532
           +Q+ LDKA  YAAEDAD+TLRL+  L+ RL +   V+ V   ++ P+V +L  +E  G  
Sbjct: 475 DQVPLDKAVAYAAEDADVTLRLYLLLRDRLLKEHMVR-VHETLDRPMVRILTDMEAAGVR 533

Query: 533 VDAELLKVQSGELGVKMAELELRAYELAGETFNLGSPKQLGTILYDKLGMPVLSKTAK-G 591
           VDA  LK  SG+   +M +LE + + LAG  FN+ SPKQLG +L++++ +    K+ K G
Sbjct: 534 VDALRLKALSGDFAKRMGDLEDQIHALAGHAFNVASPKQLGEVLFEEMSLTGGKKSRKTG 593

Query: 592 QPSTAEAVLDELALQGYPLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVA 651
             ST   VLD+LA +G+ LP  ++ +R  +KLK TYTD L  +I+ RTGR+HT+Y   V 
Sbjct: 594 AWSTDAQVLDQLAAEGHDLPARVLDWRQYAKLKGTYTDALVAEIDERTGRVHTTYGLTVT 653

Query: 652 ATGRLSSSDPNLQNIPIRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLL 711
           ATGRLSS+DPNLQNIP+R+  GR+IR+AFIA+PG+ L++ADYSQIELR++AH+A    L 
Sbjct: 654 ATGRLSSNDPNLQNIPVRSEAGRKIREAFIAAPGHLLISADYSQIELRLVAHVAGITALR 713

Query: 712 HAFRNDLDVHRATAAEVFGVALEDVTTDQRRSAKAINFGLIYGMSAFGLAKQIGVDRKQS 771
            AF    D+H  TA++VFGV +E +    RR AKAINFG+IYG+SA GLA+Q+GV R ++
Sbjct: 714 QAFAEGKDIHAITASQVFGVPVEGMDPMVRRQAKAINFGIIYGISAHGLAQQLGVGRPEA 773

Query: 772 QDYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPDINAKNPALRKGAERTAI 831
             +I  YFAR+P + +YME  + +A   G+V T FGRR+ +P I  KNPA R  AER AI
Sbjct: 774 AAFITAYFARFPEIRSYMETVKEEARTVGWVATPFGRRIPIPGIQDKNPAARAFAERQAI 833

Query: 832 NAPMQGTAADIIKRAMVKVDNWLSESGLDARVILQVHDELVLEVREDLVQQVKDEIRQHM 891
           NAP+QG AADIIKRAM+ +   L ++GL  R++LQVHDEL+ E  E   +     +++ M
Sbjct: 834 NAPIQGGAADIIKRAMIALPPALEQAGLATRMLLQVHDELIFEAPEAEAETAAALVKRVM 893

Query: 892 SQAAQL-------DVPLLVEAGVGANWDEAH 915
             A  L        VPL V+ G+ A+W EAH
Sbjct: 894 ETAVTLTDDQGERTVPLEVDTGIAASWAEAH 924