Pairwise Alignments

Query, 529 a.a., Cytochrome c oxidase subunit 1 from Pseudomonas putida KT2440

Subject, 541 a.a., Cytochrome-c oxidase from Synechococcus elongatus PCC 7942

 Score =  497 bits (1279), Expect = e-145
 Identities = 235/492 (47%), Positives = 327/492 (66%), Gaps = 4/492 (0%)

Query: 28  TTNHKDIGTMYLWFSFIMFLLGGSFAMVIRAELFQPGLQIVEPAFFNQMTTMHGLIMVFG 87
           +T+HK IG  YL  +FI +L+GG+ A  +R EL  P + +V    +NQ+ T+H  +M+F 
Sbjct: 28  STDHKVIGIQYLVLTFIFYLIGGALATAVRLELATPTVDVVSRDLYNQLFTVHATVMIFL 87

Query: 88  AVMPAFVG-LANWMIPLMIGAPDMALPRMNNFSFWLLPAAFLLLVSTLFSPGGGPNFGWT 146
            ++PA  G   N++IPL+IGA DMA P++N  +FWLLP A +LL+++       P+ GWT
Sbjct: 88  WIVPAGSGAFGNYLIPLLIGARDMAFPKLNAVAFWLLPPAGILLIASFLVEA--PSSGWT 145

Query: 147 FYAPLSTTYAPASVTFFIFAIHLMGISSIMGAINVIATILNLRAPGMTLMKMPLFVWTWL 206
            Y PLS          +I ++ L+G SSI+GAIN   TI+ +R PG+   +MPLF W  L
Sbjct: 146 SYPPLSLMSGKTGEMIWILSVLLLGTSSILGAINFATTIIKMRRPGLGWNQMPLFCWAML 205

Query: 207 ITAFLLIAVMPVLAGVVTMMLMDIHFGTSFFSAAGGGDPVLFQHVFWFFGHPEVYIMILP 266
            T+ + I   PVLAG + ++  D+  GT+FF+  GGG+PV++QH+FWF+ HP VYIMILP
Sbjct: 206 STSIMAILSTPVLAGALILLSFDLMVGTNFFNPLGGGNPVVYQHLFWFYSHPAVYIMILP 265

Query: 267 AFGAVSSIIPAFSRKPLFGYTSMVYATGAIAFLSFIVWAHHMFVVGIPVVGELFFMYATM 326
            FG +S I+P  +RKP+FGY ++ Y++ AI FLS IVWAHHMF  G P    +FFM ATM
Sbjct: 266 VFGMISEILPVHARKPIFGYQAIAYSSLAITFLSLIVWAHHMFTSGTPPWLRMFFMIATM 325

Query: 327 LIAVPTGVKVFNWVSTMWEGSLTFETPMLFAIAFVILFTIGGFSGLMLAIAPADFQYHDT 386
           +IAVPTG+KVF+W++T+W G L   + +LF++ F+ +F IGG SG+MLA  P D   HDT
Sbjct: 326 IIAVPTGIKVFSWLATLWGGKLQLTSALLFSVGFISMFVIGGLSGIMLASVPVDIHVHDT 385

Query: 387 YFVVAHFHYVLVPGAIFGIFASAYYWLPKWTGHMYDETLGKLHFWLSFVGMNMAFFPMHF 446
           YFVVAHFHYVL  G++FG++A  Y+W PK TG + +E  GK+HF L+ VG N+ F PMH+
Sbjct: 386 YFVVAHFHYVLFGGSVFGLYAGIYHWFPKMTGRLLNEGWGKVHFILTLVGFNLCFLPMHW 445

Query: 447 VGLAGMPRRIPDYNLQFADFNMVSSIGAFMFGATQIFFLFIVIKCIRGGAPAPAKPWDGA 506
           +GL GMPRR+ +Y+ QFA  N++ SIG+F+   + I FL   +     GA A   PW G 
Sbjct: 446 LGLQGMPRRVAEYDPQFATVNLICSIGSFILAISTIPFLINAVWSWIAGAKAGPNPWGGI 505

Query: 507 EGLEWSIPSPAP 518
              EW   SP P
Sbjct: 506 TP-EWLTSSPPP 516