Pairwise Alignments

Query, 529 a.a., Cytochrome c oxidase subunit 1 from Pseudomonas putida KT2440

Subject, 531 a.a., cytochrome-c oxidase (RefSeq) from Shewanella amazonensis SB2B

 Score =  911 bits (2354), Expect = 0.0
 Identities = 420/525 (80%), Positives = 469/525 (89%), Gaps = 1/525 (0%)

Query: 6   DDHAHGHD-HAHGPAKGLMRWVLTTNHKDIGTMYLWFSFIMFLLGGSFAMVIRAELFQPG 64
           D H   HD H HGPAKG+MRW+LTTNHKDIGT+YLWFSFIMFL GG+ AMVIRAELFQPG
Sbjct: 7   DTHQGVHDEHHHGPAKGIMRWILTTNHKDIGTLYLWFSFIMFLTGGAMAMVIRAELFQPG 66

Query: 65  LQIVEPAFFNQMTTMHGLIMVFGAVMPAFVGLANWMIPLMIGAPDMALPRMNNFSFWLLP 124
           LQ+VEP FFNQMTT+HGLIMVFGAVMPAF GLANW+IP+MIGAPDMALPRMNN+SFW+LP
Sbjct: 67  LQLVEPNFFNQMTTVHGLIMVFGAVMPAFTGLANWLIPMMIGAPDMALPRMNNWSFWILP 126

Query: 125 AAFLLLVSTLFSPGGGPNFGWTFYAPLSTTYAPASVTFFIFAIHLMGISSIMGAINVIAT 184
            AFL+L+S+LF  GG PNFGWTFYAPLSTTY+P S   F+F++H+MGISSIMGAINVI T
Sbjct: 127 FAFLILLSSLFMEGGAPNFGWTFYAPLSTTYSPDSTALFVFSVHIMGISSIMGAINVIVT 186

Query: 185 ILNLRAPGMTLMKMPLFVWTWLITAFLLIAVMPVLAGVVTMMLMDIHFGTSFFSAAGGGD 244
           I+NLRAPGMT MK+PLFVWTWLITAFLLIAVMPVLAGVVTM+L D +FGTSFF AAGGGD
Sbjct: 187 IVNLRAPGMTWMKLPLFVWTWLITAFLLIAVMPVLAGVVTMVLTDKYFGTSFFDAAGGGD 246

Query: 245 PVLFQHVFWFFGHPEVYIMILPAFGAVSSIIPAFSRKPLFGYTSMVYATGAIAFLSFIVW 304
           PV+FQH+FWFFGHPEVYIMILP+FG +S+I+PAFSRK LFGY SMVYAT +IA LSF+VW
Sbjct: 247 PVMFQHIFWFFGHPEVYIMILPSFGIISAIVPAFSRKKLFGYASMVYATASIAILSFLVW 306

Query: 305 AHHMFVVGIPVVGELFFMYATMLIAVPTGVKVFNWVSTMWEGSLTFETPMLFAIAFVILF 364
           AHHMF  G+PV  ELFFMY TMLIAVPTGVKVFNWV+TMW GS+TFETPMLFAIAF+ILF
Sbjct: 307 AHHMFTTGMPVFAELFFMYCTMLIAVPTGVKVFNWVATMWRGSMTFETPMLFAIAFIILF 366

Query: 365 TIGGFSGLMLAIAPADFQYHDTYFVVAHFHYVLVPGAIFGIFASAYYWLPKWTGHMYDET 424
           TIGGFSGLMLAI P DFQYHDTYFVVAHFHYVLV GAIF I A+AYYWLPKWTGHMYDE 
Sbjct: 367 TIGGFSGLMLAITPVDFQYHDTYFVVAHFHYVLVSGAIFSIMAAAYYWLPKWTGHMYDEK 426

Query: 425 LGKLHFWLSFVGMNMAFFPMHFVGLAGMPRRIPDYNLQFADFNMVSSIGAFMFGATQIFF 484
           LGKLHFW S + +N+ FFPMHF+GLAGMPRRIPDY +QFAD N + SIG F FG +Q+ F
Sbjct: 427 LGKLHFWCSVISVNVLFFPMHFLGLAGMPRRIPDYAIQFADVNQIVSIGGFAFGLSQLIF 486

Query: 485 LFIVIKCIRGGAPAPAKPWDGAEGLEWSIPSPAPYHTFQTPPEVK 529
           L +VIKCIRGG PA AKPW+G+EGLEW++PSPAPYH+F TPPEVK
Sbjct: 487 LAVVIKCIRGGEPATAKPWEGSEGLEWTLPSPAPYHSFSTPPEVK 531