Pairwise Alignments

Query, 375 a.a., cytochrome c oxidase subunit 2 from Pseudomonas putida KT2440

Subject, 520 a.a., cytochrome c oxidase, subunit II (RefSeq) from Shewanella amazonensis SB2B

 Score =  441 bits (1135), Expect = e-128
 Identities = 212/345 (61%), Positives = 256/345 (74%), Gaps = 4/345 (1%)

Query: 26  VNMHPGATEVSNAVFDLHMTIFWICVIIGIVVFGAMFWSMVIHRRSTGQQAAHFHEHTWV 85
           +NM  G TE+S  V+ LHMTI +IC  IG+VVFGAM ++M+ HR+S G  AA FHE T V
Sbjct: 24  LNMTQGVTEISGKVYGLHMTILYICCAIGVVVFGAMIYAMINHRKSKGAVAAQFHESTKV 83

Query: 86  EILWTVVPFLILVVMAIPATKTLIDIYDASESDIDVQVTGYQWKWHYKYLGQDVEFFSNL 145
           EI WT+VPFLIL+ MAIPATKTLI + D S +D+ +++TG QWKWHY Y   D  F+S L
Sbjct: 84  EIAWTLVPFLILIAMAIPATKTLIAMEDPSNADLTIKITGSQWKWHYDYFDHDFGFYSIL 143

Query: 146 ATPTDQIHNKAPKDEHYLLEVDQPLVLPVGAKVRFLVTAADVIHSWWVPAFAVKRDAIPG 205
           ATP  QI     K +HYLLEVD+ LVLP   KVRFL+T+ DVIHSWWVPAFAVK+DA PG
Sbjct: 144 ATPRSQIEGAEAKGDHYLLEVDKHLVLPTNRKVRFLMTSDDVIHSWWVPAFAVKKDANPG 203

Query: 206 FVNEAWTRIEKPGIYRGQCTELCGKDHGFMPVVVEVKSKADYDTWLGERKA----EAAKL 261
           F+NEAWTRI+KPGIY GQC ELCGKDHGFMP+VVEV  +A++DTW+  +K      AA+ 
Sbjct: 204 FINEAWTRIDKPGIYHGQCAELCGKDHGFMPIVVEVLPEAEFDTWVENQKQLASNAAAEA 263

Query: 262 KELTSKEWTLEELVERGDKVYHTTCVACHQAEGQGLPPMFPALKGSKIATGPKEGHLSIV 321
               ++  ++EEL+ +G+KVY  +C ACHQ  G GLP +FPALKGS IA GP + HL IV
Sbjct: 264 AAALNQTLSMEELMVQGEKVYMASCAACHQPNGMGLPGVFPALKGSAIAMGPVDKHLDIV 323

Query: 322 FHGKPGTAMAAFGKQLSEVDIAAVVTYERNAWGNNKGDMVTPKDV 366
            +GK GTAM AF KQLS  +IAAVVTYERNAWGNN GD V   DV
Sbjct: 324 INGKSGTAMQAFNKQLSATEIAAVVTYERNAWGNNTGDTVQASDV 368



 Score =  130 bits (327), Expect = 8e-35
 Identities = 69/120 (57%), Positives = 77/120 (64%), Gaps = 6/120 (5%)

Query: 253 ERKAEAAKLKELTSKEWTLEE------LVERGDKVYHTTCVACHQAEGQGLPPMFPALKG 306
           E   EA    E T+ E + +E      L+ RG++VY  +C ACHQA G GLP  FPA+KG
Sbjct: 396 ETSTEAPPAAESTADEPSADEPMSMDALMARGEQVYMASCAACHQANGAGLPGAFPAIKG 455

Query: 307 SKIATGPKEGHLSIVFHGKPGTAMAAFGKQLSEVDIAAVVTYERNAWGNNKGDMVTPKDV 366
           S IATGP   HL IV HGK GTAM AFG  LS  DIAAVVTYERNAW NN GD V   DV
Sbjct: 456 SPIATGPIANHLDIVIHGKAGTAMQAFGSMLSARDIAAVVTYERNAWDNNTGDSVQATDV 515