Pairwise Alignments

Query, 375 a.a., cytochrome c oxidase subunit 2 from Pseudomonas putida KT2440

Subject, 513 a.a., cytochrome c oxidase, subunit II (RefSeq) from Shewanella sp. ANA-3

 Score =  457 bits (1176), Expect = e-133
 Identities = 223/369 (60%), Positives = 273/369 (73%), Gaps = 6/369 (1%)

Query: 8   WMGLLLWSVFGQANAAWTV--NMHPGATEVSNAVFDLHMTIFWICVIIGIVVFGAMFWSM 65
           W+  LL  +F    AA  +  NM PG TE+S  V+ LHMTI +IC  IG+VVFG M ++M
Sbjct: 4   WLYCLLVVLFAPPLAAADMRFNMTPGVTEISGKVYHLHMTILYICCAIGLVVFGVMIYAM 63

Query: 66  VIHRRSTGQQAAHFHEHTWVEILWTVVPFLILVVMAIPATKTLIDIYDASESDIDVQVTG 125
           + HR+S G  A+HFHE T VEI WTV+PF+IL++MAIPATKTLI + D S +D+ V+VTG
Sbjct: 64  INHRKSKGAVASHFHESTKVEIAWTVIPFVILILMAIPATKTLIAMEDPSNADLTVKVTG 123

Query: 126 YQWKWHYKYLGQDVEFFSNLATPTDQIHNKAPKDEHYLLEVDQPLVLPVGAKVRFLVTAA 185
            QWKWHY Y  QD++F+S LATP  QI     K EHYLLEVD+PLVLPV  K+RFL+T+ 
Sbjct: 124 SQWKWHYSYFDQDIDFYSILATPRPQIEGSEAKGEHYLLEVDKPLVLPVNRKIRFLMTSE 183

Query: 186 DVIHSWWVPAFAVKRDAIPGFVNEAWTRIEKPGIYRGQCTELCGKDHGFMPVVVEVKSKA 245
           DVIHSWW+PAFAVK+DA PGF+NEAWTRI+KPGIYRGQC ELCGKDHGFMP+VV+   +A
Sbjct: 184 DVIHSWWMPAFAVKKDANPGFINEAWTRIDKPGIYRGQCAELCGKDHGFMPIVVQALPEA 243

Query: 246 DYDTWLGERK----AEAAKLKELTSKEWTLEELVERGDKVYHTTCVACHQAEGQGLPPMF 301
           ++D W+ E+K    A A   +   S+  T EEL+ +G++VY   C ACHQ  G+GL  +F
Sbjct: 244 EFDAWVEEQKQAANAAAQAAQAALSQTLTKEELMTQGEQVYLGHCAACHQPNGEGLQGVF 303

Query: 302 PALKGSKIATGPKEGHLSIVFHGKPGTAMAAFGKQLSEVDIAAVVTYERNAWGNNKGDMV 361
           P LKGS IATGP  GHL IV +GK GTAM AFGKQL+  +IAAV+TYERNAWGNN GD V
Sbjct: 304 PHLKGSPIATGPLSGHLEIVLNGKAGTAMQAFGKQLTTQEIAAVITYERNAWGNNTGDAV 363

Query: 362 TPKDVLALK 370
             KDV A K
Sbjct: 364 QAKDVDAHK 372



 Score =  132 bits (333), Expect = 2e-35
 Identities = 59/95 (62%), Positives = 69/95 (72%)

Query: 272 EELVERGDKVYHTTCVACHQAEGQGLPPMFPALKGSKIATGPKEGHLSIVFHGKPGTAMA 331
           +EL+  G+K Y T C ACHQ  G G+PP FPAL GS IATGP   H+ IV HGKPGTAM 
Sbjct: 414 DELMAEGEKTYATICAACHQLTGAGMPPAFPALAGSAIATGPIANHIDIVMHGKPGTAMQ 473

Query: 332 AFGKQLSEVDIAAVVTYERNAWGNNKGDMVTPKDV 366
           AFG QL+   +AA++TYERNAWGNN GD V P D+
Sbjct: 474 AFGTQLTPQQLAAIITYERNAWGNNTGDTVQPADI 508