Pairwise Alignments

Query, 298 a.a., HTH-type transcriptional regulator TrpI from Pseudomonas putida KT2440

Subject, 303 a.a., glycine cleavage system transcriptional activator, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  130 bits (328), Expect = 3e-35
 Identities = 86/260 (33%), Positives = 124/260 (47%), Gaps = 3/260 (1%)

Query: 1   MAHDLPPLNALRAFEATARLNSVSQAAEALHVTHGAVSRQIKVLEEHLGVALFVKDGRGI 60
           M+  LPPLNA++AFEA AR  S ++AAE L VT  AVS QIK LE+ LG+ LF +  R +
Sbjct: 1   MSRRLPPLNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRKNRSL 60

Query: 61  KLTDAGMRLRDASGEAFDRLRSVCSELSRDVSEAPFVLGCSGSLLARWFIPRLGRLQADL 120
            LT+ G        + F +L      L    +     +  S S   +W +PRL +     
Sbjct: 61  LLTEEGQSYFLDIKDIFIQLADATDRLLARSAIGSLTVSMSPSFAIQWLVPRLSKFSEKN 120

Query: 121 PELRLHLSAGEGDLDPRRPGLDALLVYAEPPWPADMQVHVLAEECIGPVLSPHFAGFQRL 180
           PE+ + + A + +       +D  + Y    WP  ++   L  E + PV SP      + 
Sbjct: 121 PEIDVRIKAVDTEASSLTDDVDVAIYYGLGNWPG-LRADKLRNEVLIPVCSPMLLNGPKP 179

Query: 181 QGAPAKALLGEALLHTTSRPQAWPTWVVQQGLEPAAIHYGQAFEHLYYLLEAAVAGLGVA 240
              P + L    LLH  SR   W  W  Q G+    ++ G  F H   +L+AA  G GVA
Sbjct: 180 LSKP-EDLKHHTLLHDMSR-HDWQAWFRQCGITDINVNQGPIFSHSSLVLQAAAHGQGVA 237

Query: 241 IAPQPLVADDLRAGRLSAPW 260
           +    L   D++AGRL  P+
Sbjct: 238 LGYSVLARPDIKAGRLVCPF 257