Pairwise Alignments

Query, 307 a.a., putative choline betaine-binding protein from Pseudomonas putida KT2440

Subject, 295 a.a., glycine betaine ABC transporter substrate-binding protein from Methanococcus maripaludis JJ

 Score =  127 bits (320), Expect = 2e-34
 Identities = 77/289 (26%), Positives = 138/289 (47%), Gaps = 10/289 (3%)

Query: 4   FSAAVFALAL---SATTAHAADSDAQCSTVKMADPGWSDIASTNAVARLLLESLGYQVKI 60
           F+ A+  LA+       +  +  D +  T+K   P W  +   + V +++LE  GY V++
Sbjct: 7   FAIALLGLAVMFSGCVQSPQSTDDTEKGTIKFGLPPWPGVTVKSNVVKVILEEQGYNVEL 66

Query: 61  DSLAVPIIYGGLKDGQVDAFLGNWMPAQQGFHDKFIAN--GDVQQLSRNLEGTEFTLAVP 118
           + L   I Y  L DG +D  L  W+P     H+++       ++ +  N+  T   LAVP
Sbjct: 67  NQLDAGITYAKLADGDLDVSLAGWLPTT---HEEYWTQYGNQLEMVHVNVGKTALGLAVP 123

Query: 119 DYVWNAGVKDFADLQKHAGQFDKKLYGIGSGAPANLSLKAIIDKNEFNLGQWKLVESSEQ 178
            Y + AG++   DL  +   FD K+ GI  GA    + +  ID   ++L  ++L  SS  
Sbjct: 124 TYTYEAGIQSITDLNGNEELFDGKIIGIEPGAGIMSNTEKAIDS--YSLSGYELQSSSTP 181

Query: 179 AMLAQVDRAVKKQQFITFLGWTPHPMNVKLKMHYLTGGEKWFGSKGEVYTLTRKGYPQAC 238
           AM+A++ RA+ + + I    W PH +  K  +  L   EK +G+  +VYT+ R  +    
Sbjct: 182 AMMAELARAINEDENIVVTVWEPHSVFFKFDIKMLDDPEKVYGNGDKVYTIARTDFKDDY 241

Query: 239 PNAAKLLGNLKFTLDMENSIMAEVVDKKISFDEAAKAWVKAHPERLDGW 287
           P   +     +    +++  + +  D+ +  +E A+ WV  +PE +  W
Sbjct: 242 PEVYEFFQKFEVDPSVQSEWIYKYSDEGMDPEEVAEEWVANNPELVANW 290