Pairwise Alignments

Query, 806 a.a., DNA gyrase subunit B from Pseudomonas putida KT2440

Subject, 659 a.a., DNA topoisomerase IV, B subunit, proteobacterial from Pseudomonas stutzeri RCH2

 Score =  367 bits (941), Expect = e-105
 Identities = 216/558 (38%), Positives = 316/558 (56%), Gaps = 24/558 (4%)

Query: 2   SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61
           +   +Y + +I+VL GLD VRKRPGMY     D S  +H+  EV+DNS+DEALAGH   +
Sbjct: 29  ARQMSYTAEAIEVLSGLDPVRKRPGMYT----DTSRPNHLAQEVIDNSVDEALAGHARSV 84

Query: 62  TVIIHPDESISVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 121
            VI+H D S+ V D+GRG+PVD+H EEGV   E+I+T LHAGGKF + +Y+ SGGLHGVG
Sbjct: 85  QVILHQDNSLEVIDDGRGMPVDIHPEEGVPGVELILTKLHAGGKFSNKNYQFSGGLHGVG 144

Query: 122 VSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGD--SETTGTHIHFKPSAETFK 179
           +SVVNALS ++ +TV+R G  +  ++  G     + V+G      TGT + F    + F 
Sbjct: 145 ISVVNALSTRVEVTVKRDGSEYRMSFADGFKATDLEVIGSVGKRNTGTSVRFWADPKYFD 204

Query: 180 NIHFSWDILAKRIRELSFLNSGVGILLKDERSGKEEFFKYEGGLRAFV-----EYLNTNK 234
           +  FS   L   ++  + L  G+ +  +D+ SG++  + YE GLR+++     +YL    
Sbjct: 205 SPKFSISRLKHVLKAKAVLCPGLSVSFEDKGSGEKVEWHYEDGLRSYLVDSVSDYLRLPD 264

Query: 235 TPVNSQVFHFNVQRDDGVGVEVALQWNDSFNENLL-CFTNNIPQRDGGTHLVGFRSSLTR 293
            P             +   V+ AL W     E++   + N IP   GGTH+ G R  L  
Sbjct: 265 EP------FVGTLAGNTEAVDWALLWLPEGGESVQESYVNLIPTAQGGTHVNGLRQGLLD 318

Query: 294 SLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQ 353
           ++  + E   L  +  +    +D  E +  ++S+K+ +P+FS QTK++L S E    V  
Sbjct: 319 AMREFCEFRNLLPRG-LKLAPEDIWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSG 377

Query: 354 EMNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQ 413
            +   F+ +L  +P     +    I+ A  R    KA +   RK       LPGKLADC 
Sbjct: 378 VVKDAFSLWLNAHPELGMQLAELAINNAGRR---LKAGKKVERKKITQGPALPGKLADCA 434

Query: 414 EKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLI 473
            +DP  +EL+LVEGDSAGGSAKQ R++  QAI+PL+GKILN  +    ++++SQEV  + 
Sbjct: 435 GQDPMRAELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNTWEVDGGEVLASQEVHDIA 494

Query: 474 TALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELVERGYIYIAQ 533
            A+G   G  +  + +LRY  I I+ DAD DG HI TLL   F +    LVE G++Y+A 
Sbjct: 495 VAIGVDPGAAD--LGQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVEAGHVYVAM 552

Query: 534 PPLYKVKRGKQEQYIKDD 551
           PPLY++  GK   Y  D+
Sbjct: 553 PPLYRIDLGKDIFYALDE 570



 Score = 54.3 bits (129), Expect = 2e-11
 Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 1/60 (1%)

Query: 738 IQRYKGLGEMNPDQLWETTMDPTVRRMLKVTIEDAIAADQIFNTLMG-DAVEPRRDFIES 796
           + R+KGLGEMNP QL ETTMDP  RR++++T++D     +I + L+       R+ ++ES
Sbjct: 591 VTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDFEGTREIMDMLLAKKRAGDRKSWLES 650