Pairwise Alignments

Query, 806 a.a., DNA gyrase subunit B from Pseudomonas putida KT2440

Subject, 645 a.a., DNA gyrase subunit B from Synechococcus elongatus PCC 7942

 Score =  548 bits (1411), Expect = e-160
 Identities = 287/560 (51%), Positives = 389/560 (69%), Gaps = 12/560 (2%)

Query: 7   YDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDITVIIH 66
           Y +S I+VL+GL+ VRKRPGMYIG T    GLHH+V+EVVDN++DEALAG+C+ I V + 
Sbjct: 5   YGASQIQVLEGLEPVRKRPGMYIGSTGP-KGLHHLVYEVVDNAVDEALAGYCNTIDVRLL 63

Query: 67  PDESISVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 126
            D S  V DNGRGIP D+H + G SA E ++T+LHAGGKF    YKVSGGLHGVGVSVVN
Sbjct: 64  EDGSCQVTDNGRGIPTDIHPQTGKSALETVLTILHAGGKFGGGGYKVSGGLHGVGVSVVN 123

Query: 127 ALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGDSETT-GTHIHFKPSAETF-KNIHFS 184
           ALSE + +TV R GK  +Q +  G P   + V  D++   GT + FKP A  F +   F 
Sbjct: 124 ALSEYVEVTVWREGKTHQQRFEQGNPIGELQVAPDADDRRGTQVRFKPDATIFSETTEFD 183

Query: 185 WDILAKRIRELSFLNSGVGILLKDER-------SGKEEFFKYEGGLRAFVEYLNTNKTPV 237
           +  LA R++EL++LN+GV I   DER          +E + +EGG+R +V Y+NT+K  +
Sbjct: 184 YGTLASRLKELAYLNAGVRIDFTDERLQLTKNHEPHQETYYFEGGIREYVAYMNTDKQAL 243

Query: 238 NSQVFHFNVQRDDGVGVEVALQWN-DSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRSLN 296
           +S++     ++D GV VE ALQW  D++++N+L F NNI   DGGTH+ G ++ LTR++N
Sbjct: 244 HSEIIFVQSEKD-GVQVEAALQWCVDAYSDNILGFANNIRTIDGGTHIEGLKTVLTRTMN 302

Query: 297 SYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMN 356
           +   +    K      +G++ REGLTAI+SVKVPDP+F  QTK KL ++EV+  V+  + 
Sbjct: 303 TIARKRNKRKDADNNLSGENIREGLTAIVSVKVPDPEFEGQTKTKLGNTEVRGIVDTLVG 362

Query: 357 KYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKD 416
           +   ++L  +P+ A  ++ K I A  A EAAR+ARE+ RRK  L+ + LPGKLADC  +D
Sbjct: 363 ETLTEYLEFHPSVADLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRD 422

Query: 417 PALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITAL 476
           P  SE+++VEGDSAGGSAKQGR+RR QAILPL+GKILN+EK    K+  + E+  LITAL
Sbjct: 423 PGESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITAL 482

Query: 477 GCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELVERGYIYIAQPPL 536
           G GI  EE++  +LRYH I+IMTDADVDG+HIRTLLLTFF+R    L+E+GYIYIA PPL
Sbjct: 483 GLGIKGEEFDASQLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQRSLLEQGYIYIACPPL 542

Query: 537 YKVKRGKQEQYIKDDEAMEE 556
           YK++RG+   Y  ++  ++E
Sbjct: 543 YKLERGRNHYYCYNERELQE 562



 Score = 91.3 bits (225), Expect = 2e-22
 Identities = 46/72 (63%), Positives = 55/72 (76%), Gaps = 2/72 (2%)

Query: 736 HTIQRYKGLGEMNPDQLWETTMDPTVRRMLKVTIEDAIAADQIFNTLMGDAVEPRRDFIE 795
           +TIQR+KGLGEM P QLWETTMDP  R M +V IEDA  AD+IF  LMGD V+PRR+FIE
Sbjct: 573 YTIQRFKGLGEMMPQQLWETTMDPETRTMKRVEIEDAAEADRIFTILMGDRVQPRREFIE 632

Query: 796 SNA--LSVSNLD 805
           +    LS++ LD
Sbjct: 633 TYGPQLSMAALD 644