Pairwise Alignments

Query, 806 a.a., DNA gyrase subunit B from Pseudomonas putida KT2440

Subject, 652 a.a., DNA topoisomerase 4 subunit B from Phaeobacter inhibens DSM 17395

 Score =  409 bits (1052), Expect = e-118
 Identities = 233/558 (41%), Positives = 341/558 (61%), Gaps = 15/558 (2%)

Query: 4   NQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDITV 63
           + TYD+SSI+VL+GL+ VR+RPGMYIG TD+ + LHHMV E++DNS+DEA+AGH + I V
Sbjct: 11  SDTYDASSIEVLEGLEPVRQRPGMYIGGTDERA-LHHMVAEILDNSMDEAVAGHANRIEV 69

Query: 64  IIHPDESISVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 122
            +H D ++++ DNGRGIP+D H K    SA EVI+  LHAGGKF   +Y+ SGGLHGVG 
Sbjct: 70  TLHADYAVTISDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQTSGGLHGVGS 129

Query: 123 SVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGDSETT-GTHIHFKPSAETFKNI 181
           SVVNALS+ +V+ V ++ +++EQ +  G+PQ P+  +G +    GT + F    + F + 
Sbjct: 130 SVVNALSDSMVVQVAKNKELFEQRFSRGIPQGPVEKIGAAPNKRGTFVTFHADEQIFGSH 189

Query: 182 HFSWDILAKRIRELSFLNSGVGILLK----DERSGKEEFFKYEGGLRAFVEYLNTNKTPV 237
            F    L   +R  ++L SGV I  K    D  +  E  F + GGL+ ++  +    +  
Sbjct: 190 RFKPKRLFTLVRSKAYLFSGVEIRWKSEIDDNETPTEATFHFPGGLKDYLTEVLGKSSVY 249

Query: 238 NSQVFHFNVQRDDGVG----VEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTR 293
             Q F   V+  +       VE A+ W  S +     + N +P  +GGTH+ GF +++ +
Sbjct: 250 AEQPFAGKVEFREKFNAPGYVEWAINWTPSRDGFTQSYCNTVPTPEGGTHVAGFWAAILK 309

Query: 294 SLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQ 353
            + +Y +  G   K   + T +D   G  A++S  + DP F  QTKD+L +      VE 
Sbjct: 310 GIKAYGDLVG--NKKAASITREDLMAGGCALVSCFIADPAFVGQTKDRLSTEIAAKMVEN 367

Query: 354 EMNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQ 413
            +  +F ++L  +   A A++  ++  A  R   RK  + T+RK A     LPGKL DC 
Sbjct: 368 SVRDHFDNWLAADTKSAGAILDFLVLRAEER-LRRKQEKETQRKSATKKLRLPGKLTDCT 426

Query: 414 EKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLI 473
            KD A +EL++VEGDSAGGS K  RNR  QA+LPLKGKILNV  A  +K+ ++ E+  L 
Sbjct: 427 SKDRAGTELFIVEGDSAGGSGKGARNRVNQALLPLKGKILNVLGAASNKIGTNAEIRDLC 486

Query: 474 TALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELVERGYIYIAQ 533
            ALG G G  ++N+D LRY  IIIMTDADVDG+HI +LL+TFFF Q+  L++ G++Y+A 
Sbjct: 487 EALGVGTG-TKFNLDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDGGHLYLAC 545

Query: 534 PPLYKVKRGKQEQYIKDD 551
           PPL+++ +G +  Y  D+
Sbjct: 546 PPLFRLTQGARRVYCLDE 563



 Score = 58.5 bits (140), Expect = 1e-12
 Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 2/70 (2%)

Query: 738 IQRYKGLGEMNPDQLWETTMDPTVRRMLKVTIEDAIAAD--QIFNTLMGDAVEPRRDFIE 795
           + R+KGLGEM+   L ETTMDPT R++++VTI++    +  ++   LMG   E R  +I+
Sbjct: 582 VSRFKGLGEMDAKDLKETTMDPTTRKLIRVTIDEDEPGETGELVEQLMGKKPELRYQYIQ 641

Query: 796 SNALSVSNLD 805
            NA  V  LD
Sbjct: 642 ENAKFVEELD 651