Pairwise Alignments

Query, 806 a.a., DNA gyrase subunit B from Pseudomonas putida KT2440

Subject, 652 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit B from Pedobacter sp. GW460-11-11-14-LB5

 Score =  569 bits (1467), Expect = e-166
 Identities = 304/566 (53%), Positives = 388/566 (68%), Gaps = 17/566 (3%)

Query: 1   MSENQ----TYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAG 56
           MSE Q     Y + +I+VL+GL+AVRKRP MYIGDT    GLHH+V+EVVDNSIDEALAG
Sbjct: 1   MSEEQDLKSNYSADNIQVLEGLEAVRKRPSMYIGDTGV-KGLHHLVYEVVDNSIDEALAG 59

Query: 57  HCDDITVIIHPDESISVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGG 116
           H D I V I    SI V DNGRGIP  ++ +E  SA E++MTVLHAGGKFD ++YKVSGG
Sbjct: 60  HADTIDVRILEGNSIRVEDNGRGIPTGINTKENKSALEIVMTVLHAGGKFDKDTYKVSGG 119

Query: 117 LHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGDSETTGTHIHFKPSAE 176
           LHGVGVS VNALS  L   V R GKIW Q Y  G P   +  VG+++  GT + F P A 
Sbjct: 120 LHGVGVSCVNALSTHLKAEVHREGKIWMQEYNIGKPLYDVKEVGETDKRGTIVTFSPDAT 179

Query: 177 TF-KNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKE------EFFKYEGGLRAFVEY 229
            F +   + +D LA R+REL+FLN G+ + L DER   E      E F  EGGL+ FV +
Sbjct: 180 IFTQTTEYKYDTLAGRLRELAFLNKGITLTLTDEREVLEDGKFLSEVFHSEGGLKEFVAF 239

Query: 230 LNTNKTPVNSQVFHFNVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 289
           L+  +     +  +    ++ G+ VE+A Q+NDS++EN+  + NNI   +GGTH+ GFR 
Sbjct: 240 LDGTRASFLPEPIYIEGIKN-GIPVELAFQYNDSYSENVHSYVNNINTHEGGTHIAGFRR 298

Query: 290 SLTRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 349
            LTR+L +Y ++ GL K  K+  TGDD REGLTA++SVKV +P+F  QTK KL +SEV  
Sbjct: 299 GLTRTLKAYADKSGLLKNLKMEITGDDFREGLTAVVSVKVQEPQFEGQTKTKLGNSEVMG 358

Query: 350 AVEQEMNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 409
           AV+  + +    +L ENP EAK ++ K+I AA AR AARKAREM +RK  +  +GLPGKL
Sbjct: 359 AVDVAVGEALGYYLEENPKEAKMIINKVILAATARAAARKAREMVQRKSVMGGSGLPGKL 418

Query: 410 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 469
           ADC + DP   E+YLVEGDSAGG+AKQGR+R  QAILPLKGKILNVEKA   K+  + E+
Sbjct: 419 ADCSDSDPERCEIYLVEGDSAGGTAKQGRDRNIQAILPLKGKILNVEKAMEHKIYENDEI 478

Query: 470 GTLITALGCGIGREE----YNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELVE 525
             + TA+G  IG  E     N+ KLRYH I+IMTDAD+DGSHI TL+LTFF+R +  L+E
Sbjct: 479 KNMFTAIGVSIGTPEDDKALNLTKLRYHKIVIMTDADIDGSHITTLILTFFYRYMRALIE 538

Query: 526 RGYIYIAQPPLYKVKRGKQEQYIKDD 551
            GY+YIA PPLY+VK+GK  +Y  +D
Sbjct: 539 AGYVYIASPPLYQVKKGKDFEYCWND 564



 Score = 83.6 bits (205), Expect = 3e-20
 Identities = 38/61 (62%), Positives = 46/61 (75%)

Query: 738 IQRYKGLGEMNPDQLWETTMDPTVRRMLKVTIEDAIAADQIFNTLMGDAVEPRRDFIESN 797
           IQRYKGLGEMN +QLW+TT++P  R +L+ TIE A   D  F+ LMGD V PRR+FIE N
Sbjct: 585 IQRYKGLGEMNAEQLWDTTLNPATRTLLQATIESAAECDHTFSMLMGDEVAPRREFIERN 644

Query: 798 A 798
           A
Sbjct: 645 A 645