Pairwise Alignments

Query, 806 a.a., DNA gyrase subunit B from Pseudomonas putida KT2440

Subject, 657 a.a., type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit from Dechlorosoma suillum PS

 Score =  352 bits (903), Expect = e-101
 Identities = 226/614 (36%), Positives = 335/614 (54%), Gaps = 43/614 (7%)

Query: 1   MSENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDD 60
           MS    Y++SSI VLKGL+ V++RPGMY    +      H++ EV+DN+ DEA+AG    
Sbjct: 1   MSNPSDYNASSITVLKGLEPVKQRPGMYTRTENP----LHIIQEVIDNAADEAIAGFAKS 56

Query: 61  ITVIIHPDESISVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNS---YKVSGGL 117
           I V +H D SISV DNGRGIPV++H  E     EV+ T LHAGGKF+  +   Y  SGGL
Sbjct: 57  ILVTVHVDGSISVADNGRGIPVELHPVENAPTVEVVFTRLHAGGKFNKGAGGAYSFSGGL 116

Query: 118 HGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGDS--ETTGTHIHFKPSA 175
           HGVGVSV NALS +L + V R G +    +  G    P+A +GD+  + +GT +   P A
Sbjct: 117 HGVGVSVTNALSTRLEVEVAREGGMHRLVFAAGDVVEPLARIGDAPKKASGTRVRAWPDA 176

Query: 176 ETFKNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKEEFFKYEGGLRAFVEYLNTNKT 235
           + F +       L   +R  + L  GV + L  ERSG+ + + Y+ G+R ++  L     
Sbjct: 177 KYFDSPTIPMGELEHILRSKAVLLPGVAVTLHIERSGETKEWAYKDGMRGYLAELLDGTD 236

Query: 236 --------------PVNSQVFHFNVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGG 281
                         P N   F       +G G   A+ W +        + N IP   GG
Sbjct: 237 LVIPMIVGEKYAGKPTNGDGFA------EGEGAAWAIAWTEEGALARESYVNLIPTPGGG 290

Query: 282 THLVGFRSSLTRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDK 341
           TH  G R  + +++ S+++   L  K  V    +D     + ++S ++ DP F  QTKD+
Sbjct: 291 THESGLRDGIFQAVKSFVDMHSLLPKG-VKLLPEDVFGRASFLLSARILDPSFQGQTKDR 349

Query: 342 LVSSEVKTAVEQEMNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALD 401
           L S +    V       F  +L E+    K +    I  A++R+  R A+++ ++KG+  
Sbjct: 350 LNSRDAVKLVSAMFRDTFELWLNEHVEYGKKLAELSIKQAQSRQ--RSAQKVEKKKGS-G 406

Query: 402 IAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFD 461
           +A LPGKL DC+  D   +EL+LVEGDSAGGSAKQGR++  QA+LPL+GK+ N  +   D
Sbjct: 407 VAVLPGKLTDCESDDIERNELFLVEGDSAGGSAKQGRDKEFQALLPLRGKVQNSWEVEPD 466

Query: 462 KMISSQEVGTLITALGCG--IGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQ 519
           ++ ++ E+  +  A+G        + +ID LRY  +IIM+DADVDGSHI+ LLLT FFR 
Sbjct: 467 RLYANVEIHNIAVAIGVDHHTLESDTSIDGLRYGKVIIMSDADVDGSHIQCLLLTLFFRH 526

Query: 520 LPELVERGYIYIAQPPLYKVKRGKQEQYIKDDEAMEEYMTQSALEDASLHLDESAPAVSG 579
            P+L+  G IY+A+PPL++V    Q    K+    + Y    AL++  L   +      G
Sbjct: 527 FPKLIANGNIYVAKPPLFRVDVPGQG---KNRPPRKIY----ALDENELEAVKDKLVKEG 579

Query: 580 VQLEAL-VNEFRSV 592
           ++LEAL ++ F+ +
Sbjct: 580 IKLEALSISRFKGL 593



 Score = 50.8 bits (120), Expect = 2e-10
 Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 3/62 (4%)

Query: 737 TIQRYKGLGEMNPDQLWETTMDPTVRRMLKVTIEDAIAADQI--FNTLMGDA-VEPRRDF 793
           +I R+KGLGEM+ +QLW+TT++P  RR+++V   D    + I   N LMG      RR++
Sbjct: 586 SISRFKGLGEMSSEQLWDTTLNPDTRRLVRVEFGDYPMEETIAKMNMLMGKGEASSRREW 645

Query: 794 IE 795
           +E
Sbjct: 646 LE 647