Pairwise Alignments

Query, 806 a.a., DNA gyrase subunit B from Pseudomonas putida KT2440

Subject, 631 a.a., DNA topoisomerase IV subunit B from Klebsiella michiganensis M5al

 Score =  372 bits (956), Expect = e-107
 Identities = 222/552 (40%), Positives = 325/552 (58%), Gaps = 18/552 (3%)

Query: 6   TYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDITVII 65
           +Y++ +I+VL GL+ VR+RPGMY   T      +H+  EV+DNS+DEALAGH   + VI+
Sbjct: 5   SYNADAIEVLTGLEPVRRRPGMYTDTTRP----NHLGQEVIDNSVDEALAGHAKRVEVIL 60

Query: 66  HPDESISVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV 125
           H D+S+ V D+GRG+PVD+H EEGV A E+I+  LHAGGKF + +Y+ SGGLHGVG+SVV
Sbjct: 61  HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 120

Query: 126 NALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVG--DSETTGTHIHFKPSAETFKNIHF 183
           NALS+++ + VRR G+I+   + +G     + V G      TGT +HF P    F +  F
Sbjct: 121 NALSKRVEVNVRRDGQIYSIAFENGDKVEDLHVTGTCGKRNTGTSVHFWPDESFFDSPRF 180

Query: 184 SWDILAKRIRELSFLNSGVGILLKDERSGKEEFFKYEGGLRAFVEYLN--TNKTPVNSQV 241
           S   L+  ++  + L  GV I+ +D  +  E+ + Y  GL    +YL+   N  P+  + 
Sbjct: 181 SVSRLSHLLKAKAVLCPGVEIVFRDLVNDSEQRWCYADGL---TDYLSEAVNGLPLLPEK 237

Query: 242 FHFNVQRDDGVGVEVALQWNDSFNENLL-CFTNNIPQRDGGTHLVGFRSSLTRSLNSYIE 300
                   D   V+ AL W     E L   + N IP   GGTH+ G R  L  ++  + E
Sbjct: 238 PFVGTFSGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCE 297

Query: 301 QEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNKYFA 360
              +  +  V  + +D  E    ++SVK+ DP+F+ QTK++L S +    V   +   F+
Sbjct: 298 YRNILPRG-VKLSAEDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFS 356

Query: 361 DFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALS 420
            +L +N   A+ +    I +A+ R   R A+++ R+K     A LPGKLADC  +D   +
Sbjct: 357 LWLNQNVQSAELLAEMAISSAQRR--LRAAKKVVRKKLTSGPA-LPGKLADCTAQDLNRT 413

Query: 421 ELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGI 480
           EL+LVEGDSAGGSAKQ R+R  QAI+PLKGKILN  +   D++++SQEV  +  A+  GI
Sbjct: 414 ELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAI--GI 471

Query: 481 GREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELVERGYIYIAQPPLYKVK 540
             +  ++ +LRY  I I+ DAD DG HI TLL   F R    LV+ G++Y+A PPLY++ 
Sbjct: 472 DPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRTLVKHGHVYVALPPLYRID 531

Query: 541 RGKQEQYIKDDE 552
            GK+  Y   +E
Sbjct: 532 LGKEVYYALTEE 543



 Score = 52.4 bits (124), Expect = 8e-11
 Identities = 43/120 (35%), Positives = 63/120 (52%), Gaps = 22/120 (18%)

Query: 689 YRTVVNIGAKLSSL-------LGEGAYVQRGERRKAIVEFKEGLDWLMNETTKRHTIQRY 741
           +RT+V  G    +L       LG+  Y    E  KA V     L+ L  +  K + +QR+
Sbjct: 511 FRTLVKHGHVYVALPPLYRIDLGKEVYYALTEEEKAGV-----LEQLKRKKGKPN-VQRF 564

Query: 742 KGLGEMNPDQLWETTMDPTVRRMLKVTIEDAIAADQIFNTLMGDAV------EPRRDFIE 795
           KGLGEMNP QL ETT+DP  RR++++ I D    D+   T M D +      E RR++++
Sbjct: 565 KGLGEMNPLQLRETTLDPNTRRLVQLIIND---EDEQQTTAMMDMLLAKKRSEDRRNWLQ 621