Pairwise Alignments

Query, 506 a.a., chromosomal replication initiator protein from Pseudomonas putida KT2440

Subject, 460 a.a., chromosomal replication initiator protein DnaA (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  616 bits (1589), Expect = 0.0
 Identities = 324/506 (64%), Positives = 378/506 (74%), Gaps = 46/506 (9%)

Query: 1   MSVELWQQCVELLRDELPAQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLL 60
           M+V LWQQC+  L+DEL AQQF+ WIRPLQ E +GD L +YAPNRFVLDWV +KY+  + 
Sbjct: 1   MAVSLWQQCIGRLQDELSAQQFSMWIRPLQAEMDGDTLVLYAPNRFVLDWVRDKYINIIN 60

Query: 61  ELLGENGSGIAPALSLLIGSRRSSAPRAAPNAPVSAAVAASLAQTQAHKTAPAAAVEPVA 120
           +   E     AP L   IGSR  SA +  P APV AAV     QT+A         EPVA
Sbjct: 61  QFFTEQMGNDAPKLRFDIGSR-PSAKKPEP-APV-AAVRVPSPQTKASVGTAFNTTEPVA 117

Query: 121 VAAAEPVLVETSSRDSFDAMAEPAAAPPSGGGRAEQRTVQVEGALKHTSYLNRTFTFDTF 180
                                                         H S +N T+ FD F
Sbjct: 118 NT-------------------------------------------NHRSNINPTYQFDNF 134

Query: 181 VEGKSNQLARAAAWQVADNPKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYL 240
           VEGKSNQL +AAA QVA+NP   YNPLFLYGG GLGKTHL+HAVGN ++K NPNAKVVY+
Sbjct: 135 VEGKSNQLGKAAALQVAENPGGAYNPLFLYGGTGLGKTHLLHAVGNGIIKNNPNAKVVYM 194

Query: 241 HSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGG 300
           HSERFV DMVKALQ NAI EFKR+YRSVDAL IDDIQFFA K+RSQEEFFHTFNALLEG 
Sbjct: 195 HSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFANKDRSQEEFFHTFNALLEGN 254

Query: 301 QQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKADQAKVELPHDA 360
            Q+ILTSDRYPKEI+G+E+RLKSRFGWGLTVA+EPPELETRVAILM+KA ++ + LP + 
Sbjct: 255 HQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAQESGINLPDEV 314

Query: 361 AFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLALQDKLVSVDNIQR 420
           AFFIA+R+RSNVRELEGAL RVIA+++F GR ITI+ +RE+L+DLLALQ+KLV++DNIQ+
Sbjct: 315 AFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDLLALQEKLVTIDNIQK 374

Query: 421 TVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDMFGGRDHTTVLHAC 480
           TVAEYYKIK++D+LSKRRSRSVARPRQVAMALSKELTN SLPEIGD FGGRDHTTVLHAC
Sbjct: 375 TVAEYYKIKMADMLSKRRSRSVARPRQVAMALSKELTNQSLPEIGDAFGGRDHTTVLHAC 434

Query: 481 RKINELKESDADIREDYKNLLRTLTT 506
           RKI +L+E   DI+EDY NL+RTL++
Sbjct: 435 RKIAQLREESHDIKEDYANLIRTLSS 460