Pairwise Alignments

Query, 340 a.a., flagellar motor protein MotB from Pseudomonas sp. SVBP6

Subject, 393 a.a., Flagellar motor rotation protein MotB from Xanthomonas campestris pv. campestris strain 8004

 Score =  265 bits (677), Expect = 1e-75
 Identities = 147/321 (45%), Positives = 202/321 (62%), Gaps = 23/321 (7%)

Query: 2   ENNQPIIVKRIKRF-GDGHHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYF 60
           E    +I++R+K+  G GHHGGAWK+AFADF TAMMAFFLVLWL++  T EQ+ AI+ YF
Sbjct: 3   EGKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62

Query: 61  KDPI---GFSESGTP----------YIIDLGGSPQLAPEKTINPEVKSEPTPDTSLQLDQ 107
           ++P    G S + +P           +I LGG+  +A  +      K +   DT      
Sbjct: 63  RNPSPLSGKSPAPSPGMNGPGGASTSMIKLGGTADMAKGQKDEMGRKRDNAADTD----- 117

Query: 108 DKVESMAEQVERERLELLLQELQNKVEENPQLQKFKDQILFEITQDGLRIQIMDAENRPM 167
             V+S A+  +++RLE L+Q+L+  ++++  L+ FKDQ+L ++T DGLRIQI+D +NRPM
Sbjct: 118 --VDSRAK--DKKRLEALMQDLKEAIDKSQALEPFKDQLLLDLTPDGLRIQIVDKQNRPM 173

Query: 168 FDLGSARLQPYFEDILLAMADTIKAVPNKISISGHTDAKPYAGTGDFGNWELSANRANAA 227
           FD+G  +L+PY  DIL  ++  I  VPN ISI+GHTD   Y+    + NWELSA+RANAA
Sbjct: 174 FDIGRDQLKPYTVDILRELSSFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAA 233

Query: 228 RRALVAGGYPDTQVARVVGYASSSLFDRQNPLNPVNRRIDIIVLTKKAQRTIEGEQTQPA 287
           RRALV GG  D +V RVVG +SS LFD+ NP NP+NRRI I+V+T+ A++       Q  
Sbjct: 234 RRALVGGGMADAKVTRVVGLSSSVLFDKTNPQNPINRRISIVVMTQDAEQAALAGSDQGV 293

Query: 288 APDAAQPGAAAPVPAAPQAQA 308
           A     P A   VP    A A
Sbjct: 294 ALGKPIPDADTHVPDLSGAAA 314