Pairwise Alignments

Query, 340 a.a., flagellar motor protein MotB from Pseudomonas sp. SVBP6

Subject, 329 a.a., flagellar motor protein MotB from Burkholderia phytofirmans PsJN

 Score =  215 bits (547), Expect = 1e-60
 Identities = 129/304 (42%), Positives = 177/304 (58%), Gaps = 17/304 (5%)

Query: 6   PIIVKRIKRFGD--GHHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYFKDP 63
           P+IV+R ++ GD   HHGGAWKIA+ADF TAMMAFFL++WLL + +   K  I  YF  P
Sbjct: 17  PVIVRRSRKGGDHGAHHGGAWKIAYADFVTAMMAFFLLMWLLGSTSKFDKQGIEDYFNTP 76

Query: 64  I----GFSESGT---PYIIDLGGSPQLAPEKTINPEVKSEPTPDTSLQLDQDKVESMAEQ 116
           +    G +E  T   P ++  GG         +  + +SEPTP            S+A  
Sbjct: 77  LSSLLGGNEGTTAARPSVVQGGGRDISDTRPAVGKKSQSEPTPPAVT------TPSVAPS 130

Query: 117 VERERLELLLQELQNKVEENPQLQKFKDQILFEITQDGLRIQIMDAENRPMFDLGSARLQ 176
            +  RLE L  +L   +E++P L+ FKDQI   IT +GLRI+I+D++NRPMF  GS++LQ
Sbjct: 131 -DATRLEQLKAKLTALIEQSPILKAFKDQIRISITNEGLRIEIVDSQNRPMFPSGSSKLQ 189

Query: 177 PYFEDILLAMADTIKAVPNKISISGHTDAKPY-AGTGDFGNWELSANRANAARRALVAGG 235
           PY   IL  +   +  V N++SI+GHTDA PY AG   + NWELS+ RANAARR+LVAGG
Sbjct: 190 PYAVTILTQIGAALNDVDNRVSIAGHTDAVPYTAGPEGYSNWELSSERANAARRSLVAGG 249

Query: 236 YPDTQVARVVGYASSSLFDRQNPLNPVNRRIDIIVLTKKAQRTIEGEQTQPAAPDAAQPG 295
               ++ +V G A     + Q    P NRRI I+VL K A+     +  + A  +A    
Sbjct: 250 MHGEKLLQVRGLADVLPLNSQVADEPTNRRISILVLNKAAELAFFHDGGRTAIDEATPAS 309

Query: 296 AAAP 299
           +A P
Sbjct: 310 SAIP 313