Pairwise Alignments

Query, 671 a.a., excinuclease ABC subunit UvrB from Pseudomonas sp. SVBP6

Subject, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

 Score =  949 bits (2453), Expect = 0.0
 Identities = 478/671 (71%), Positives = 572/671 (85%), Gaps = 7/671 (1%)

Query: 4   FQLVTRFQPAGDQPEAIRLMVEGIEAGLAHQTLLGVTGSGKTFSIANVIAQVQRPTLVLA 63
           F+LV+ +QPAGDQP AI+ ++EG+EAGLAHQTLLGVTGSGKTF++ANVIA  QRPT++LA
Sbjct: 5   FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILA 64

Query: 64  PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123
           PNKTLAAQLYGE KAFFPNNAVEYFVSYYDYYQPEAYVP++DTFIEKDAS+N HIEQMRL
Sbjct: 65  PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124

Query: 124 SATKALLERRDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQYTRN 183
           SATKALLER+DA+IV +VS IYGLG P++YLKM+LH+ RGD ++QR +LRRLA+LQY+RN
Sbjct: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184

Query: 184 EMDFARATFRVRGDVIDIFPAESDLEAIRIELFDDEVENIAAFDPLTGEVI-RKLPRFTF 242
           +M F R  FRVRG+VIDIFPAESD EA+R+E+FDDE+E I+ FDPLTG +  R L RFT 
Sbjct: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLARFTI 244

Query: 243 YPKSHYVTPRETLLEAVDGIKVELAQRLEYLHKANKLVEAQRLEQRTRFDLEMILELGYC 302
           YPK+HYVTPRE +LEA++ IK EL  R +YL   NKL+E QR+ QRT+FD+EM+ ELG+C
Sbjct: 245 YPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304

Query: 303 NGIENYSRYLSGRPAGAPPPTLYDYLPDDALLVIDESHVSVPQVGAMYKGDRSRKETLVE 362
           +GIENYSRYLSGR  G PPPTL+DYLP D LL+IDESHV+VPQ+GAM+KGDRSRKETLVE
Sbjct: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364

Query: 363 YGFRLPSALDNRPMRFDEWEAVSPQTIFVSATPGNYE-AEHAGRVVEQVVRPTGLVDPQV 421
           +GFRLPSALDNRP++FDE+EA++PQTIFVSATP  YE  +  G V EQVVRPTGL+DP +
Sbjct: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDPII 424

Query: 422 EVRPATTQVDDLLSEIRKRVAVEERVLVTTLTKRMAEDLTDYLADHDVRVRYLHSDIDTV 481
           EVRP  TQVDDLLSE R R A +ER+LVTTLTKRMAEDLT+YL +H V+VRYLHSDIDTV
Sbjct: 425 EVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTV 484

Query: 482 ERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 541
           ERVEIIRDLRLG FDVLVGINLLREGLDMPEV+LVAILDADKEGFLRSERSLIQT+GRAA
Sbjct: 485 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAA 544

Query: 542 RNLNGRAILYADNMTGSMQRAIGETERRRDKQIAFNAANGIVPKGVVKDITDIMEGANVP 601
           RN+NG+AILYAD++T SM++AI ETERRR+KQ+A+N   GI P+ + + + DIME  ++ 
Sbjct: 545 RNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMELGDIA 604

Query: 602 GSRSKKRK---GMAKAAEESARYEAELRSPGEIAKRIKQLEEKMYQLARDLEFEAAAQLR 658
            SR +K      +AK AEESA Y  ++ +P ++ K I +LE  MYQ A++LEFE AAQ R
Sbjct: 605 KSRKQKNSKVVPLAKVAEESAAY--QVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQKR 662

Query: 659 DEITALRERMI 669
           DEI  LR++ I
Sbjct: 663 DEIHQLRQQFI 673