Pairwise Alignments

Query, 671 a.a., excinuclease ABC subunit UvrB from Pseudomonas sp. SVBP6

Subject, 672 a.a., excinuclease ABC subunit B (RefSeq) from Shewanella amazonensis SB2B

 Score =  924 bits (2387), Expect = 0.0
 Identities = 468/676 (69%), Positives = 562/676 (83%), Gaps = 9/676 (1%)

Query: 1   MSE--FQLVTRFQPAGDQPEAIRLMVEGIEAGLAHQTLLGVTGSGKTFSIANVIAQVQRP 58
           MSE  FQL + + PAGDQP AI  +++G+E+GLA QTLLGVTGSGKTF++ANVIA + RP
Sbjct: 1   MSEQVFQLSSHYSPAGDQPTAIAKLIDGLESGLACQTLLGVTGSGKTFTVANVIATLGRP 60

Query: 59  TLVLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHI 118
           T+++APNKTLAAQLYGE K FFPNNAVEYFVSYYDYYQPEAYVP+S+TFIEKDAS+N HI
Sbjct: 61  TIIMAPNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHI 120

Query: 119 EQMRLSATKALLERRDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADL 178
           EQMRLSATKALLERRD IIV +VS IYGLG P++Y+KM+LH+ +GD + QR +LRRL++L
Sbjct: 121 EQMRLSATKALLERRDVIIVASVSAIYGLGDPDSYMKMLLHLRQGDFMGQRDILRRLSEL 180

Query: 179 QYTRNEMDFARATFRVRGDVIDIFPAESDLEAIRIELFDDEVENIAAFDPLTGEVIRKLP 238
           QY+RN++D  R TFRVRG+VIDIFPA+S+ +AIR+ELFDDE+E I+ FDPLTG+V ++L 
Sbjct: 181 QYSRNDIDLQRGTFRVRGEVIDIFPADSERDAIRVELFDDEIERISEFDPLTGQVTKRLA 240

Query: 239 RFTFYPKSHYVTPRETLLEAVDGIKVELAQRLEYLHKANKLVEAQRLEQRTRFDLEMILE 298
           R T YPK+HYVTPRE +LEA+D IK EL  R +     +KL+EAQR+ +R ++D+EM+ E
Sbjct: 241 RATVYPKTHYVTPREKILEAIDQIKDELRVRKQQFLDNHKLIEAQRITERVQYDVEMMTE 300

Query: 299 LGYCNGIENYSRYLSGRPAGAPPPTLYDYLPDDALLVIDESHVSVPQVGAMYKGDRSRKE 358
           LGYC+GIENYSRYLSGR  G  PPTL DYLP D L++IDESH +VPQ+GAMYKGDRSRK 
Sbjct: 301 LGYCSGIENYSRYLSGRAEGEGPPTLLDYLPADGLMIIDESHNTVPQIGAMYKGDRSRKT 360

Query: 359 TLVEYGFRLPSALDNRPMRFDEWEAVSPQTIFVSATPGNYEAEHAG-RVVEQVVRPTGLV 417
           TLVEYGFRLPSALDNRP++F+E+E++ PQTIFVSATPG YE E +G  + EQVVRPTGL+
Sbjct: 361 TLVEYGFRLPSALDNRPLKFEEFESLMPQTIFVSATPGKYELEKSGDDIAEQVVRPTGLI 420

Query: 418 DPQVEVRPATTQVDDLLSEIRKRVAVEERVLVTTLTKRMAEDLTDYLADHDVRVRYLHSD 477
           DP++EVRP   QVDDLLSE+ KRVAV ERVLVTTLTKRMAEDLTDYL +H V+VRYLHSD
Sbjct: 421 DPELEVRPVAIQVDDLLSEVAKRVAVNERVLVTTLTKRMAEDLTDYLDEHGVKVRYLHSD 480

Query: 478 IDTVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 537
           IDTVER+EIIRDLRLG FDVLVGINLLREGLDMPEVSLV ILDADKEGFLRSERSLIQTI
Sbjct: 481 IDTVERMEIIRDLRLGVFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTI 540

Query: 538 GRAARNLNGRAILYADNMTGSMQRAIGETERRRDKQIAFNAANGIVPKGVVKDITDIMEG 597
           GRAARN+NG+ ILYAD +T SM RA+ ETERRR KQ+ FN  +GI+P+GVVK ITD+M+ 
Sbjct: 541 GRAARNVNGKVILYADRITDSMARAMAETERRRTKQMQFNEEHGIIPRGVVKKITDVMD- 599

Query: 598 ANVPGSRSKKRKGMAKAAEES--ARYEAELRSPGEIAKRIKQLEEKMYQLARDLEFEAAA 655
               G RS   +G  KA+  S      +  + P +IA  I  LE++M+Q ARDLEFE AA
Sbjct: 600 ---VGERSAPSRGAVKASGRSRDVGKPSMRQDPHQIAVTIDALEKQMHQHARDLEFEQAA 656

Query: 656 QLRDEITALRERMITA 671
            LRDEI  LR++++ A
Sbjct: 657 ALRDEIHGLRQQLLEA 672