Pairwise Alignments

Query, 671 a.a., excinuclease ABC subunit UvrB from Pseudomonas sp. SVBP6

Subject, 733 a.a., Excinuclease ABC, B subunit (NCBI) from Rhodospirillum rubrum S1H

 Score =  766 bits (1978), Expect = 0.0
 Identities = 393/664 (59%), Positives = 498/664 (75%), Gaps = 11/664 (1%)

Query: 2   SEFQLVTRFQPAGDQPEAIRLMVEGIEAGLAHQTLLGVTGSGKTFSIANVIAQVQRPTLV 61
           +EF+L + +QPAGDQP+AI  ++ G+ A    Q LLGVTGSGKTF++A VIA++ RPTL+
Sbjct: 36  AEFRLASDYQPAGDQPQAIAELLRGLAAQDRDQVLLGVTGSGKTFTMAQVIAEMGRPTLI 95

Query: 62  LAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQM 121
           LAPNKTLAAQLYGEFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEKD+SIN+ I++M
Sbjct: 96  LAPNKTLAAQLYGEFKNFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRM 155

Query: 122 RLSATKALLERRDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQYT 181
           R +AT+ALLERRD IIV +VSCIYG+GS E+Y +M++ +  G  L +  LL+ L +LQ+T
Sbjct: 156 RHAATRALLERRDVIIVASVSCIYGIGSVESYSRMIIPIKVGTTLPRADLLKALVELQFT 215

Query: 182 RNEMDFARATFRVRGDVIDIFPAESDLEAIRIELFDDEVENIAAFDPLTGEVIRKLPRFT 241
           RN++ F R  FRVRGD ++IFPA  +  A R+ L+ DE+E++  FDPLTGE+   L   T
Sbjct: 216 RNDIAFTRGMFRVRGDSVEIFPAHYEDRAWRVSLWGDEIESVREFDPLTGEITASLDEVT 275

Query: 242 FYPKSHYVTPRETLLEAVDGIKVELAQRLEYLHKANKLVEAQRLEQRTRFDLEMILELGY 301
            YP SH+VTPR  L +AV  IK EL + L   +   K++EAQRLEQRT FDLEMI   G+
Sbjct: 276 VYPASHHVTPRPALSQAVRTIKAELKETLARFYDQGKVLEAQRLEQRTTFDLEMIEATGH 335

Query: 302 CNGIENYSRYLSGRPAGAPPPTLYDYLPDDALLVIDESHVSVPQVGAMYKGDRSRKETLV 361
           C  IENYSR+L+GR  G PPPTL++YLP+DALL +DESHV+VPQ+G M++GD +RK  L 
Sbjct: 336 CKSIENYSRHLTGRRPGDPPPTLFEYLPEDALLFVDESHVAVPQIGGMFRGDFNRKSVLA 395

Query: 362 EYGFRLPSALDNRPMRFDEWEAVSPQTIFVSATPGNYEAEHAGRVV-EQVVRPTGLVDPQ 420
           E+GFRLPS +DNRP++F+EW+ + P +IFVSATPG +E E  G VV EQV+RPTGLVDP 
Sbjct: 396 EFGFRLPSCVDNRPLKFEEWDVMRPPSIFVSATPGRWELERTGGVVAEQVIRPTGLVDPV 455

Query: 421 VEVRPATTQVDDLLSEIRKRVAVEERVLVTTLTKRMAEDLTDYLADHDVRVRYLHSDIDT 480
             +RP   QVDDLL E++   A  ERVLVTTLTKRM+EDLT+YL +  VRVRY+HSDI+T
Sbjct: 456 CIIRPVEAQVDDLLGEVKACAARGERVLVTTLTKRMSEDLTEYLTEQGVRVRYMHSDIET 515

Query: 481 VERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 540
           +ER+EIIRDLRLG FDVLVGINLLREGLD+PE +LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 516 LERIEIIRDLRLGAFDVLVGINLLREGLDIPECALVAILDADKEGFLRSRTSLIQTIGRA 575

Query: 541 ARNLNGRAILYADNMTGSMQRAIGETERRRDKQIAFNAANGIVPKGVVKDITDIMEGANV 600
           ARN+ GR ILYAD MT S+  AI ET RRR +Q  +NAA+GI P+ V   I+D++     
Sbjct: 576 ARNVGGRVILYADKMTDSLTFAIEETSRRRQRQQDYNAAHGITPETVRSRISDVL----- 630

Query: 601 PGSRSKKRKGMAKAAEESARYEAELRSPGEIAKRIKQLEEKMYQLARDLEFEAAAQLRDE 660
             S   ++  +      S   +   +S   + + +  L+++M   A DLEFE A +LRDE
Sbjct: 631 --SSVYEKDYVTVTTGVSGDNQLVGKS---LREHLADLDKRMRAAAADLEFEEAGRLRDE 685

Query: 661 ITAL 664
           I  L
Sbjct: 686 IRRL 689