Pairwise Alignments

Query, 513 a.a., deoxyribodipyrimidine photolyase-related protein from Pseudomonas sp. S08-1

Subject, 516 a.a., cryptochrome/photolyase family protein from Vibrio cholerae E7946 ATCC 55056

 Score =  390 bits (1001), Expect = e-113
 Identities = 216/510 (42%), Positives = 288/510 (56%), Gaps = 14/510 (2%)

Query: 10  LVLGDQLSFDLSLFDALDPARDAVL--MAEVSEEARYVPHHPQKIVLVFSAMRHFAQALE 67
           L+LGDQL+   S F      RD VL  +AE+ +E  YV HH QK    F+AM+ FA  L 
Sbjct: 8   LILGDQLNHAHSWFSE---HRDDVLYLIAELHQEQEYVRHHIQKQCAFFAAMQAFADYLS 64

Query: 68  ARGWRVIYVRLDAVDNSGSLAGELRRWHDALGGPELHLTECGEWRVEEA---LRASGLPL 124
           A G  V ++ LDA      L   + +    +           E+R+ E    LR SG+ +
Sbjct: 65  AEGHHVWHLDLDASAQYNDLPDLIAQICQQVQADAFQYQRPDEYRLLEQMANLRLSGITI 124

Query: 125 NWHVDRRFLCSREEFARWAGSRRQLRMELFYREMRRRSGLLLEPDGGPLGGSWNFDADNR 184
                  FL    E      + + + ME FYR MR+R G L+  DG P GG WNFDADNR
Sbjct: 125 GCVDTEHFLLPFAEIPEQFPASKAVLMEHFYRRMRKRFGYLMTADGKPEGGQWNFDADNR 184

Query: 185 KALPKGARGPFPARFGQDAITREVVALVGERFASHYGRL-EGFDYPVTHAQAQELWRHFL 243
             L        P     D     + A +        G++ E   +P+  AQA  L  HF 
Sbjct: 185 NKLKSPDLLQLPTPLCFDNPVASIKARIERHRIPSIGQVGESLLWPINRAQALSLLAHFC 244

Query: 244 EFSLPSFGDYQDAMAEGEPY---LFHARISAALNVGLLDLRQLCADVESAHR--QGWVPL 298
           +  LP+FG +QDAM    P+   L+H+R+S ALN  LL  R++     SA+R  QG + L
Sbjct: 245 QICLPNFGRFQDAMTAQHPHRWSLYHSRLSFALNSKLLSPREVIEATISAYRAAQGQISL 304

Query: 299 NAAEGFIRQLIGWREYVRGIYWLRMPDYAALNLFGNSRALPEFYWTGRTEMRCMAQAIGQ 358
              EGF+RQ++GWREYVRG+YW  MP Y   N  G  R LP ++W G+T+MRC+ QAI Q
Sbjct: 305 AQVEGFVRQILGWREYVRGMYWSNMPHYQTRNHLGAQRPLPSYFWNGQTKMRCLQQAITQ 364

Query: 359 TLELGYAHHIQRLMVTGNFALLAGIAPAAICEWYLAVYLDAFEWVELPNTLGMVMHADGG 418
           +L+ GYAHHIQRLMVTGNFALL    P  +  WYL +Y+DA EWVELPNT GM + ADGG
Sbjct: 365 SLDFGYAHHIQRLMVTGNFALLTECDPDQVDAWYLGIYIDAIEWVELPNTRGMALFADGG 424

Query: 419 YLGSKPYCASGRYIQRMSDHCTACRYRVDRATEEDACPFNSLYWHFLMRHRDRLGRNPRM 478
            + +KPY ASG YI +MSD+C +C Y+V   + E ACP NSLYW F+++HRDRL  NPR+
Sbjct: 425 LIATKPYSASGSYINKMSDYCASCAYQVKLKSGEKACPLNSLYWRFMLKHRDRLANNPRI 484

Query: 479 AMAYRNLQRMDESRVAALWRRGEQLLARLD 508
            M Y+   +M      A+    +  L++++
Sbjct: 485 GMLYKTWDKMTSDSQQAILSTADAYLSQIE 514