Pairwise Alignments

Query, 652 a.a., Methyl-accepting chemotaxis sensor/transducer protein from Pseudomonas sp. S08-1

Subject, 640 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  196 bits (497), Expect = 4e-54
 Identities = 149/466 (31%), Positives = 239/466 (51%), Gaps = 41/466 (8%)

Query: 203 LGETGETYLVGADGRLRSDSVRFTEHKVARDGQ-QGEQLPGAAIG--KALAGQQG-RLAE 258
           +GE G  YL   +G++          K+    Q  G+QL    I   +AL  QQ    +E
Sbjct: 198 IGEQGRVYLTDGNGQI----------KIHGQSQFAGKQLSALGIKDPQALLSQQTFATSE 247

Query: 259 PGLNGQPVLKAFVPLQLDGRRWALVAEMDQEQAFAAVRTLMWQVVVLVLLTIAGVALAT- 317
              NG   L A   +   G  W L+AE+ Q++ F A+    WQ+ ++ L+  A +   + 
Sbjct: 248 YDNNGVDTLVASRYIPSIG--WYLIAEVPQDELFGAINKASWQLALMGLILAAIIMFTSA 305

Query: 318 WLVSRSVMRPLGGEPRSMAELARRLAAGE----LRLSADGGEHSGLMQALHEMARAWRQV 373
           WL++R ++ P G     +A++ + +  GE    LRL     + +G       MA ++ Q 
Sbjct: 306 WLINR-LISPFG----ELADMLKSIGEGEGDLSLRLDDSRQDETG------SMAASYNQF 354

Query: 374 VERLRQASQAVGDASGDILGAAGRTSSS-------LDQQQEALELVVSAVDQMAATVQEI 426
           V  L +  Q+V   + D+  A  R  +        ++ Q   +E V +A+ +M  T QEI
Sbjct: 355 VTYLSKTLQSVSATANDLFQAVERIDNQAKHMEHEINDQVSKIEQVATAIHEMGMTAQEI 414

Query: 427 ASNASQSADGSAAARDAFVTVQGSLQRMIGQQDQLLAGLRGADQVVQTLASDSQQIGSVL 486
           AS+A+ +A+ +  A  +      S+Q  I     +   L    + V  LA D+  I +VL
Sbjct: 415 ASSANNAAENAQVADQSVNQGNQSVQNTIASVASMSEQLLTTSETVSQLAEDASSIDTVL 474

Query: 487 EVIRAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLALRTRSATEEIVTIVAALG 546
           EVIR ++EQTNLLALNAAIEAARAGEQGRGFAVVADEVR LA R+ ++TE+I  I+  L 
Sbjct: 475 EVIRGVSEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRSHASTEDIRHIIEKLQ 534

Query: 547 ESSGEAQARMQGSSEQARALEVETQAVLGSLGHLDDSLQGVHALAFQIAAAAEQQAATTQ 606
             + E    +  S+ Q++  + E       L  + +++Q +  ++ QIA A E+Q+    
Sbjct: 535 AKTTEVVNAIGQSTNQSQQSQQEASLSGEHLHSIAENIQAMSEMSMQIATATEEQSNVVG 594

Query: 607 EVNQHMHRLNDMTGENRRTAAHTR-DCGEHLRKVAGSQEQLVAQFQ 651
           E+N H+  + D++  +      T  DC + LR++A    +LV++F+
Sbjct: 595 EINPHVTAIADISRSSSDVVRQTSLDCSD-LREMAVQLNELVSRFK 639