Pairwise Alignments

Query, 571 a.a., single-stranded-DNA-specific exonuclease RecJ from Pseudomonas sp. S08-1

Subject, 565 a.a., single-stranded-DNA-specific exonuclease RecJ from Dechlorosoma suillum PS

 Score =  582 bits (1500), Expect = e-170
 Identities = 313/554 (56%), Positives = 388/554 (70%), Gaps = 12/554 (2%)

Query: 18  LPPLLTRLYASRGVQSAAELDKGLARLIPYQQLKGMDGAVELLVQALEQRQRILIVGDFD 77
           L PLL R+YA+RG++  AELD  L  LIP  QL G + A  LL  A+E   RIL+VGD+D
Sbjct: 22  LHPLLARIYAARGIKHKAELDYDLKSLIPPSQLTGTEEAAILLADAIEAEARILVVGDYD 81

Query: 78  ADGATASSVGVLGLRMLGAAHVDYLVPNRFEYGYGLTPEIVAVALQRQPDLLLTVDNGIS 137
            DGATA++V V  LR+LG   VDYLVP+RF +GYGL+P+IV +A +RQPDLL+TVDNGI+
Sbjct: 82  CDGATATAVAVRALRLLGGT-VDYLVPDRFVHGYGLSPQIVELAAERQPDLLVTVDNGIA 140

Query: 138 SVEGVAAAKAAGLKVLVTDHHLPGPELPAADAIVNPNQPGCEFPSKALAGVGVMFYVLLA 197
           S+EGV AA+  G+  L+TDHHLP   LP AD IVNPNQPGC FPSKALAGVGVMFYV LA
Sbjct: 141 SIEGVEAARQLGIATLITDHHLPAETLPEADCIVNPNQPGCTFPSKALAGVGVMFYVALA 200

Query: 198 LRAKLREIGWFTSSGVAEPNLGELLDLVALGSVADVVPLDANNRILVHQGLARIRAGRAR 257
           LRA++R  G F      EPN   LLDLVALG+VADVV LD NNRILV QGL R+R G+  
Sbjct: 201 LRAEMRRRGAFGPER-PEPNFSCLLDLVALGTVADVVKLDHNNRILVAQGLKRMREGKLT 259

Query: 258 PGLRAILEVAGRQHGRISSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDEALVRDMAQQ 317
           PG+RA+   AGR     S+ DLGF +GPRLNAAGRL DMSLGIECL+ DDEA   ++AQQ
Sbjct: 260 PGIRALFRAAGRNLQTASAFDLGFTVGPRLNAAGRLSDMSLGIECLITDDEARAANIAQQ 319

Query: 318 LDDLNKDRKAIEQGMQREALAQLKDMSVEDMPFGLCLFEADWHQGVIGILASRLKERYHR 377
           LD LN++R+ IE GMQ +AL  L++  +E    G+ LF+ DWHQGV+GILASR+KE+ HR
Sbjct: 320 LDQLNRERREIEAGMQEQALIHLENFDLEASGAGVALFDPDWHQGVVGILASRIKEKLHR 379

Query: 378 PAIAFADAGDGLLKGSARSVPGLHIRDALDAVAARHPGLISKFGGHAMAAGLSLPQENYG 437
           P  AFA   DG +KGS RS+PGLH+RDALD V+ R PG++ +FGGHAMAAG +L +E + 
Sbjct: 380 PVFAFARGDDGQIKGSGRSIPGLHLRDALDLVSKRAPGILLRFGGHAMAAGATLMEERFE 439

Query: 438 AFAAAFDAEVRRQLTEDDLTGRLLSDGQLGVEEFHLELAKALRHAGP-WGQHFPEPLFHG 496
            F + F       L   DLT  L +DG L      L++A+ L  AG  WGQ FP PLF  
Sbjct: 440 EFKSLFAQVADELLNPADLTRTLETDGALEAGYISLQVAEML--AGEVWGQGFPAPLFED 497

Query: 497 VFQIVNQRVVGEKHLKLVLKTECGGQTLDGIAFNVDRDTWPNPNVRWVELAYKLDVNEYQ 556
           VF++ +QRV+ +KHLKL LK E     L+ I FN   +  P P  R   LAY+L +N+Y 
Sbjct: 498 VFEVESQRVLKDKHLKLRLKKE--RSVLEAIQFNATEN--PGPRAR---LAYRLTINDYN 550

Query: 557 GRESVQLLVAHLAP 570
           G ++ QL+V H AP
Sbjct: 551 GVQTPQLVVEHCAP 564