Pairwise Alignments

Query, 571 a.a., single-stranded-DNA-specific exonuclease RecJ from Pseudomonas sp. S08-1

Subject, 577 a.a., ssDNA exonuclease RecJ from Klebsiella michiganensis M5al

 Score =  654 bits (1687), Expect = 0.0
 Identities = 330/556 (59%), Positives = 417/556 (75%), Gaps = 2/556 (0%)

Query: 17  ELPPLLTRLYASRGVQSAAELDKGLARLIPYQQLKGMDGAVELLVQALEQRQRILIVGDF 76
           +LPPLL RLYASRGV+SA EL++G+  ++P+ QL G++ AVE+L  A +Q   I++VGDF
Sbjct: 21  DLPPLLQRLYASRGVRSAQELERGVKGMLPWSQLTGVEKAVEILYGAFKQGLHIVVVGDF 80

Query: 77  DADGATASSVGVLGLRMLGAAHVDYLVPNRFEYGYGLTPEIVAVALQRQPDLLLTVDNGI 136
           DADGAT++++ VL LR LG  +V YLVPNRFE GYGL+PE+V  A  R   L++TVDNGI
Sbjct: 81  DADGATSTALSVLALRALGYGNVSYLVPNRFEDGYGLSPEVVDQAHARGAQLIMTVDNGI 140

Query: 137 SSVEGVAAAKAAGLKVLVTDHHLPGPELPAADAIVNPNQPGCEFPSKALAGVGVMFYVLL 196
           SS  GV  A A G+ VLVTDHHLPG  LPAA+AI+NPN   CEFPSK+LAGVGV FY++L
Sbjct: 141 SSHAGVDHAHALGIPVLVTDHHLPGDSLPAAEAIINPNLRDCEFPSKSLAGVGVAFYLML 200

Query: 197 ALRAKLREIGWFTSSGVAEPNLGELLDLVALGSVADVVPLDANNRILVHQGLARIRAGRA 256
           ALR  LR+ GWF   G+A PNL +LLDLVALG+VADVVPLDANNRIL  QGL+RIRAG+ 
Sbjct: 201 ALRTFLRDKGWFEERGIAPPNLADLLDLVALGTVADVVPLDANNRILTWQGLSRIRAGKC 260

Query: 257 RPGLRAILEVAGRQHGRISSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDEALVRDMAQ 316
           RPG++A+LE+A R   +++++DLGF LGPRLNAAGRLDDMS+G+  LLCD+    R +A 
Sbjct: 261 RPGIKALLEIANRDPQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNTGEARVLAN 320

Query: 317 QLDDLNKDRKAIEQGMQREA--LAQLKDMSVEDMPFGLCLFEADWHQGVIGILASRLKER 374
           +LD LN+ RK IEQGMQ EA  L +  + S E +P GL ++   WHQGV+GILASR+KER
Sbjct: 321 ELDALNQTRKEIEQGMQAEALTLCEKLERSGETLPGGLAMYHPQWHQGVVGILASRIKER 380

Query: 375 YHRPAIAFADAGDGLLKGSARSVPGLHIRDALDAVAARHPGLISKFGGHAMAAGLSLPQE 434
           +HRP IAFA  GDG LKGS RS+ GLH+RDAL+ +   +PGLI KFGGHAMAAGLSL + 
Sbjct: 381 FHRPVIAFAPTGDGTLKGSGRSIQGLHMRDALERLDTLYPGLIMKFGGHAMAAGLSLEEA 440

Query: 435 NYGAFAAAFDAEVRRQLTEDDLTGRLLSDGQLGVEEFHLELAKALRHAGPWGQHFPEPLF 494
            +  F   F   V   L    L G ++SDG L   E  +E+A+ LR AGPWGQ FPEPLF
Sbjct: 441 RFEEFQQRFGELVTEWLDPALLQGEVVSDGPLTAAEMSMEVAQMLRDAGPWGQMFPEPLF 500

Query: 495 HGVFQIVNQRVVGEKHLKLVLKTECGGQTLDGIAFNVDRDTWPNPNVRWVELAYKLDVNE 554
            G F+++ QR+VGE+HLK++++   GG  LDGIAFNVD   WP+  VR V+LAYKLD+NE
Sbjct: 501 DGRFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTSLWPDNGVREVQLAYKLDINE 560

Query: 555 YQGRESVQLLVAHLAP 570
           ++G  S+QL++ HL P
Sbjct: 561 FRGNRSLQLIIDHLWP 576