Pairwise Alignments

Query, 712 a.a., Methyl-accepting chemotaxis sensor/transducer protein from Pseudomonas sp. S08-1

Subject, 620 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  270 bits (691), Expect = 1e-76
 Identities = 162/379 (42%), Positives = 232/379 (61%), Gaps = 3/379 (0%)

Query: 337 SAVFADLQQLQAGLAEQANQDTFGMALVGLLIAALGLLVIWFVGYGIARPLKDMAAMLDD 396
           S+    L QL+A   +  +        + +++  L  LV+      I R + +    + D
Sbjct: 242 SSAEKSLVQLKAQSMDAISDAESATVTISIVVFILITLVLIGFTLAIIRSIMEPVQRISD 301

Query: 397 IA---KGDGDLTVRLQVDRADELGQIASGFNTFLNKLQNMIRDVVTSVQKVSDSSEHTAD 453
                +   DLT+R      DE+GQIA  FN+ +   Q++IR+V+TSV+ V+ S +  ++
Sbjct: 302 AISRIEATKDLTLRCDTKVDDEIGQIARHFNSMVESFQSLIREVLTSVEVVNHSCQELSE 361

Query: 454 IAIRTNQGVQRQMAEIDQVATAVHEMTATAQDVARNATQAAEAASHADRSANDGKRIVEG 513
            ++R ++GV RQ+ E D VATA+ EM AT  ++A N   AAE A +   +A  G+  VE 
Sbjct: 362 NSMRASEGVGRQLNETDMVATAITEMGATIDEIASNTELAAERAGNTHDNAQQGQVGVEH 421

Query: 514 TAKAISALAGEIGRAVSVVQTLAKDSENINAILVAIRGIAEQTNLLALNAAIEAARAGEQ 573
           T + I ALA ++  +  VV  L KDSE I ++L  IRGIAEQTNLLALNAAIEAARAGEQ
Sbjct: 422 TIEKIQALAAQLTDSAQVVSELEKDSETIGSVLDVIRGIAEQTNLLALNAAIEAARAGEQ 481

Query: 574 GRGFAVVADEVRNLAQKTQQATEEIQSMIQQLQHGTREVVTVMEQSQARTDDSVQQAQIA 633
           GRGFAVVADEVR+LA +TQ++TEEI  +IQ LQ  TR +V +ME +Q +  +S  QA  A
Sbjct: 482 GRGFAVVADEVRSLAMRTQESTEEIAGIIQTLQSRTRSIVQLMEATQRQGIESADQAASA 541

Query: 634 ASALENITQAVSVINDMNTQIASAAEEQSAVAEDINRNVTNIGQVAAEVAGGADEASGAS 693
            + LE I   V+ I DM+TQIA+A EEQS VA ++N+NV  I  +AAE A  ADE + AS
Sbjct: 542 GALLEQINADVTNIMDMSTQIAAAIEEQSMVASEVNKNVVVIRDIAAESAQAADENAKAS 601

Query: 694 AELTKLAEQQRRLINQFRV 712
            ++    +   + ++ F++
Sbjct: 602 DDVKARTQVLYQAVSLFKI 620