Pairwise Alignments

Query, 712 a.a., Methyl-accepting chemotaxis sensor/transducer protein from Pseudomonas sp. S08-1

Subject, 705 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  343 bits (879), Expect = 2e-98
 Identities = 229/721 (31%), Positives = 368/721 (51%), Gaps = 27/721 (3%)

Query: 1   MRFKSIQFSVVVLAGASVLAVVVALVLYALFASSRTQTLVHERTQGLLEQVIDQRLVALA 60
           M+  SI   ++ +  A  L +V  L     ++ S     +  + QG L     QRL A A
Sbjct: 1   MKHLSISTKLLWITSALFLIIVAILSFSLWWSLSDKNAQLAGQVQGALHDETRQRLSARA 60

Query: 61  ----EAQVGKLQRQFEAPMTLSKSLATLNSQMAPGADGAAKVSLSRDELSTLVGVYLEKN 116
               E   G +   +  P + +  +             AA   LSR+ +   V   L KN
Sbjct: 61  GEYGERVAGFINEAYRIPFSFAGMIE----------QSAASQPLSREGVEESVAGVLRKN 110

Query: 117 PELIDLYIGWEPNAFDQDDDLYAGQEAAGYDATGRFMPWWYR--DGGQFKVAPLTAVQME 174
            +L  +Y  +EPN +D  D  Y  + +      G    ++ R  DG         A +  
Sbjct: 111 SQLSSMYAQFEPNGYDGRDGDYTQKISHSVPEVGTLEIYYTRSDDGSVEHQQVDDASEKY 170

Query: 175 SEKLLPTGVREGEYYLCPKASKQPCVVDPASYDFG-GKQVLVSSFNAPILVDGQFKGVVG 233
              L   GVRE E+YLC K +KQPC+++P  Y+   G   L++S   P++V G F+GV+G
Sbjct: 171 DATLKEFGVREAEWYLCAKDTKQPCLMEPYLYEISPGNTALMTSLTVPVVVGGSFRGVIG 230

Query: 234 NDLALDFIQGLLTSANGELYEGAGELALIAANGTLIAAT---KDATLVGQPAAKVLDAEL 290
            D+ L   Q L+   +  LY+G  ++ L++  G ++AA+   K A  +G+  A  L ++L
Sbjct: 231 VDVNLPVFQKLIDELSASLYQGKAKVTLLSQKGLVVAASHYDKKARPLGESIAPSLASQL 290

Query: 291 LERLKQSSGTEPILKLDEEQQLFQLLLPFQVAGTSTRWTLAITLPTSAVFADLQQLQAGL 350
               +Q    E       +     +  P ++     +W+L I +  +  +     +   +
Sbjct: 291 TGLHRQGGYLE-------QGDNIIVAYPIEIPLAKAQWSLVIEVAKADAYQAANAMDKAM 343

Query: 351 AEQANQDTFGMALVGLLIAALGLLVIWFVGYGIARPLKDMAAMLDDIAKGDGDLTVRLQV 410
           +  A+     + +VG++++ + ++ I  V   I  PLK + + ++++A  +GDLT ++ V
Sbjct: 344 SAMASSLGSLLLIVGVIVSLIAVVTISLVIRSIVAPLKVIQSRVENLASAEGDLTQQVTV 403

Query: 411 DRADELGQIASGFNTFLNKLQNMIRDVVTSVQKVSDSSEHTADIAIRTNQGVQRQMAEID 470
           +   EL  +  G N F+NKL+ +I ++     +    S+  A+IA +T+  V RQ ++I+
Sbjct: 404 ESHAELIALGGGINGFINKLRLLIGELKELASRSQAESQVAAEIAQQTHNSVNRQYSDIE 463

Query: 471 QVATAVHEMTATAQDVARNATQAAEAASHADRSANDGKRIVEGTAKAISALAGEIGRAVS 530
            V TAV+EM+ATA +VA+ + Q A        +   G+  +      ++ ++ E   A  
Sbjct: 464 SVVTAVNEMSATALEVAKASEQTASETEAMTLNVKAGEDSLSQAMGYVTHMSQESLLAKE 523

Query: 531 VVQTLAKDSENINAILVAIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAQK 590
            V  +A+ S NI+ IL  I  IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR LA K
Sbjct: 524 AVGKVAESSTNISKILEVISAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASK 583

Query: 591 TQQATEEIQSMIQQLQHGTREVVTVMEQSQARTDDSVQQAQIAASALENITQAVSVINDM 650
           TQ +T+EI  +I+ LQ        +++Q       +V Q + A S+L  I   +  ++  
Sbjct: 584 TQSSTDEIGKLIEALQREVNSASQIIDQGVDGAQRAVAQTESALSSLNTIVNQIQEVSSQ 643

Query: 651 NTQIASAAEEQSAVAEDINRNVTNIGQVAAEVAGGADEASGASAELTKLAEQQRRLINQF 710
            T IA+AAEEQSAV E+++RN+T I   A+E+A  ADEA  +SA L  L EQQ + + + 
Sbjct: 644 VTHIATAAEEQSAVTEEVSRNITGISDSASELARLADEAQQSSASLAGLVEQQHQQLGKL 703

Query: 711 R 711
           +
Sbjct: 704 K 704