Pairwise Alignments

Query, 1251 a.a., Two-component system sensor histidine kinase from Pseudomonas sp. S08-1

Subject, 1230 a.a., PAS/PAC sensor hybrid histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  245 bits (626), Expect = 2e-68
 Identities = 214/776 (27%), Positives = 361/776 (46%), Gaps = 79/776 (10%)

Query: 347  RQRQQLRESEGR-------FRLVVEASPNAIVLVDGSGKVVMVNRQVELMFGYERDELLG 399
            R+ ++L+E+  R        R ++++ P AI+  D  GK +  N+  E M GY   E++G
Sbjct: 441  RRTERLKETTERREREYALLRSLLDSIPEAIIFKDKEGKYLGCNKSAERMLGYTESEMIG 500

Query: 400  QPVERLLPEQLRQGHPAMRQAYQKAPEQRRMGGNRELFGQHR---DGRLIPLEVGLAPI- 455
            Q  + +   +      +MR    +A ++R +     L  Q +    G+ + L+    P  
Sbjct: 501  QDSQTMTSNE-----QSMRI---RAEDERVLSERTPLRYQEKVELAGKPVLLDTLKLPFY 552

Query: 456  -RVGEEMLVQAVIIDISER-------KSAEERFRLVVEASPNAIVLVDGKGRLSMVNRQT 507
             R GE + + AV  D++         + +EER+ L ++A  + +          + N   
Sbjct: 553  NRRGELLGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQIICNPAY 612

Query: 508  EQMFGYERAEM--LGQPVEMLLPEAARAQHPSLRDGFIKDPSPR-----RMGGNRELFGQ 560
              M GY+  E   L   ++ L+    R +    R+ ++ DP        RM G   ++  
Sbjct: 613  YSMLGYKSNEFPALVSTIDELVHPDDRIRVQEYREQYLADPIGAYDVEFRMRGKSGMYHW 672

Query: 561  HRD-GRLIPLEVGLSPIRADGERLVQAVIIDISERKAAEQRLREQAEQLALANRYKSEFL 619
                GR++       P R  G         DI+  K+ E  L E  +    AN YKSEFL
Sbjct: 673  VLSRGRVVEFTSDNQPKRMVGTHK------DITRHKSNEVALLEAKQDAESANLYKSEFL 726

Query: 620  ANMSHELRTPLNSILILSEQLRHNVAGNLTEKQVKHADIVYKAGNDLLQLINDVLDLAKI 679
            ANMSHE+RTP+N+I+ + +         LT +Q  + D    +   LL++IND+LD +KI
Sbjct: 727  ANMSHEIRTPMNAIIGMLQLASRT---QLTPQQADYLDKAGFSAQSLLRIINDILDFSKI 783

Query: 680  EAGRVQLKLEPLNIHDLLVELDSSLRPMAEIKGLRLLTHLEPGVARMIHSDRGRLQQILR 739
            EAG+++L+     +  +L          A+ KG+ LL +       ++  D  RL Q+L 
Sbjct: 784  EAGKLELERVAFPLDKVLDHALDLNALKAQEKGVELLLYAPVTAGLILEGDPLRLGQVLI 843

Query: 740  NLLSNALKFTEHGEVELSIGLSPVSLDDERETLQFVVRDSGIGIDPAQHERIFQAFQQID 799
            N+LSNA+KFT+ GE+EL  G   V   D R TL+F VRD+GIGI   Q E +F AF Q D
Sbjct: 844  NMLSNAVKFTQSGEIEL--GCEDVGERDHRITLKFWVRDTGIGISKEQQESLFDAFAQAD 901

Query: 800  GSTSRRFGGTGLGLAITRQLVEVLGGQISLESTPGQGSRFIVRLPVVALNPQAKEDESLS 859
            GST+R++GGTGLGL+I++ LV ++GG + ++S  G GS F   +        A+E E   
Sbjct: 902  GSTTRKYGGTGLGLSISKHLVSMMGGTMQVQSELGVGSTFSFTISFEI----AEEAEVKP 957

Query: 860  ATPQRSGSGPAVLIVEDDPNFAAVIAEEAQAHGFSSVHCRNGKQAIGLLQSERFVAVILD 919
                        L+V+D+P    + +   +   F      NG +A+  L+      ++LD
Sbjct: 958  LIVPEVIGNLKTLVVDDNPTALQIYSTAMRDFHFDVDTASNGAEALYKLEHRPVDLLLLD 1017

Query: 920  ILLPDISGWQIYRRL-----RGLMQYRDVPVHIVSCVPQP--QDWHG-DGTRYLVKPVAR 971
             ++P++ G ++ + L      G ++ R V + + +   +P  +D    D    L KP   
Sbjct: 1018 WMMPEMDGVEVIKALDAMVADGRLEKRPVIIMMTAYASEPLKEDLDDLDIYAMLQKPFKA 1077

Query: 972  QDLERVFEDIVVL------------------SAPSRDLLLVEDVEVEREHYREHLVQMGF 1013
              L   F++I+                    +  +  +LLVED  + ++   E L   G+
Sbjct: 1078 SAL---FDEIIAAFIDKPKINPAAALPVEGNATGTGQILLVEDNFINQQVATELLKSAGY 1134

Query: 1014 RVTAVASAEQARQAYAAQSFDALVIDLDLPDQDGFDLLETLQRERALRDTQVVINT 1069
             V    + + A     A+ +DA+++D+ +P  DG    + L++     +  V+  T
Sbjct: 1135 EVDVAENGQVALDMVDAKQYDAVLMDIQMPVMDGLTATKELRKRYTKEELPVIAMT 1190



 Score =  107 bits (267), Expect = 6e-27
 Identities = 80/264 (30%), Positives = 130/264 (49%), Gaps = 22/264 (8%)

Query: 992  LLVEDVEVEREHYREHLVQMGFRVTAVASAEQARQAYAAQSFDALVIDLDLPDQDGFDLL 1051
            L+V+D     + Y   +    F V   ++  +A      +  D L++D  +P+ DG +++
Sbjct: 970  LVVDDNPTALQIYSTAMRDFHFDVDTASNGAEALYKLEHRPVDLLLLDWMMPEMDGVEVI 1029

Query: 1052 ETLQRERA---LRDTQVVINTGV---DITRQDLQRLRRYSAVVVRKSGDDLRPLGAALQG 1105
            + L    A   L    V+I       +  ++DL  L  Y+  +++K           +  
Sbjct: 1030 KALDAMVADGRLEKRPVIIMMTAYASEPLKEDLDDLDIYA--MLQKPFKASALFDEIIAA 1087

Query: 1106 FLSTVREPPA-----DGSQLAGKRVLLVDDDIRNIYAMTALLDELGLAVVPAKDGEEALV 1160
            F+   +  PA     +G+     ++LLV+D+  N    T LL   G  V  A++G+ AL 
Sbjct: 1088 FIDKPKINPAAALPVEGNATGTGQILLVEDNFINQQVATELLKSAGYEVDVAENGQVALD 1147

Query: 1161 AFDREPFDLVLMDMAMPNMDGYTAT-----RILKDERGCGIPVIALTAHAMKGDREKCIT 1215
              D + +D VLMD+ MP MDG TAT     R  K+E    +PVIA+TAHAM GDREK + 
Sbjct: 1148 MVDAKQYDAVLMDIQMPVMDGLTATKELRKRYTKEE----LPVIAMTAHAMSGDREKSLA 1203

Query: 1216 AGCDDYLAKPVARQELLEMLHRWL 1239
            AG + ++ KP+   EL + L +W+
Sbjct: 1204 AGMNAHITKPIVLNELFDTLAQWI 1227



 Score = 42.4 bits (98), Expect = 3e-07
 Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 5/115 (4%)

Query: 1124 RVLLVDDDIRNIYAMTALLDELGLAVVPAKDGEEALVAFDREPFDLVLMDMAMPNMDGYT 1183
            + L+VDD+   +   +  + +    V  A +G EAL   +  P DL+L+D  MP MDG  
Sbjct: 968  KTLVVDDNPTALQIYSTAMRDFHFDVDTASNGAEALYKLEHRPVDLLLLDWMMPEMDGVE 1027

Query: 1184 ATRIL----KDERGCGIPV-IALTAHAMKGDREKCITAGCDDYLAKPVARQELLE 1233
              + L     D R    PV I +TA+A +  +E          L KP     L +
Sbjct: 1028 VIKALDAMVADGRLEKRPVIIMMTAYASEPLKEDLDDLDIYAMLQKPFKASALFD 1082