Pairwise Alignments

Query, 312 a.a., Efflux ABC transporter, ATP-binding protein from Pseudomonas sp. S08-1

Subject, 340 a.a., ABC transporter-related protein (RefSeq) from Shewanella loihica PV-4

 Score =  320 bits (820), Expect = 3e-92
 Identities = 168/330 (50%), Positives = 234/330 (70%), Gaps = 22/330 (6%)

Query: 3   DSDLVIRARGLSKRFGKLTAVDHLDLSVPRAEVFGFLGPNGCGKSTTIRMLCGLLQPSEG 62
           ++DL I ARG+ KRFG L AV  LDL V +  ++GFLGPNGCGKSTTIRML GLL P+ G
Sbjct: 4   NADLAIDARGVDKRFGDLLAVAELDLQVQKGHIYGFLGPNGCGKSTTIRMLTGLLTPTRG 63

Query: 63  EVEVLGCQIPRDAEELKRRIGYMTQKFSLYEDLTVQENLEFLASVQGIGRRETRQRIDEL 122
           E+ VLG  IP+ AE L+RRIGYMTQKFSLYEDL+V+ENL+F+A + G+G RE++++IDEL
Sbjct: 64  EISVLGMAIPQQAEALRRRIGYMTQKFSLYEDLSVRENLQFIADIYGLGARESKRKIDEL 123

Query: 123 LERYWLTDRRKQLAGTMSGGQKQRLALAGAVLHKPDLLLLDEPTSAVDPQSRREFWDSLF 182
           ++ Y L  +R+QLAGT+SGGQKQRL LA A +++P+LL LDEPTSAVDPQ+RR+FW+ LF
Sbjct: 124 IDTYHLDAQRQQLAGTLSGGQKQRLGLACACINEPELLFLDEPTSAVDPQNRRDFWEQLF 183

Query: 183 ELAEEGTTLLVSTHYMDEAERCTRLGILDAGRLVADGSPRELMDALPGHPLLIECAQPRA 242
           +L+E GT++LV+THYMDEA+RC +L I+++G + A G+P+ L++A+P H + I   + R 
Sbjct: 184 DLSERGTSILVTTHYMDEAQRCHQLAIMESGHIRAKGNPQALLEAMPLHVIEIAGHRLRQ 243

Query: 243 AQRALHGHREVLASAQIGATLRVLCASENARDDIAATLRRAGV----------------E 286
            +  L    E+ ++AQ+G  LRVL   + A D I   L ++                   
Sbjct: 244 LKSHLSQFSEIPSAAQLGDRLRVLVDKQIA-DPIPWLLEKSRTMTGQLTPEPLSPNQFNA 302

Query: 287 AELRDGE-----ANLEDVFVAVTRKPLEAT 311
           ++L+  +      NLED+FV+VT K L+ +
Sbjct: 303 SQLKPNQLSLVSPNLEDLFVSVTGKGLKTS 332