Pairwise Alignments

Query, 630 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Pseudomonas sp. S08-1

Subject, 1515 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  376 bits (965), Expect = e-108
 Identities = 210/459 (45%), Positives = 282/459 (61%), Gaps = 11/459 (2%)

Query: 170  AAAVWLLANDL------RKALLRLQQEILRVKDSEASFTHLAQHDALTNLPNRLLIRDRM 223
            A  VWL  N +          + +  +I   K +E     LA  D LT LPNR L +DR+
Sbjct: 1041 AILVWLEINQVIDVKGETSHFVAVFTDITERKKAEEDLRFLASFDTLTGLPNRTLFQDRL 1100

Query: 224  EQAIGRARRDDEQVALLFLDLDNFKTINDSLGHAAGDELLQEVARRLKDTVRDIDTVSRQ 283
              AI +A R +  VALLFLDLD FK INDS+GH  GD LL+ VA RL+  VR+ DTV+R 
Sbjct: 1101 NHAISQAHRSNNIVALLFLDLDRFKHINDSMGHHIGDLLLKAVAHRLQSAVREGDTVARL 1160

Query: 284  GGDEFLMVLADVADLAAVSSVAALVQQKLAQPFALKGMQIVTSISIGISLFPGDGDDFDT 343
            GGDEF ++L  VA   A + ++  V +    PF L    +  S SIGISL+P D  D D+
Sbjct: 1161 GGDEFTIILEGVAKTKAATLISEKVLKAFQAPFLLDDKSLNISTSIGISLYPNDAKDVDS 1220

Query: 344  LLKHADMAMYQAKSAGRNGFCFFDEQMNADTHERLALELDLRQALSRGEFVLHYQPIIDL 403
            L+K AD AMY AK+ GRN F F+  ++N      + LE  L+QA+S  E  L YQP   L
Sbjct: 1221 LIKFADTAMYHAKALGRNNFQFYTNKLNEMATRHMQLETGLKQAISHNELSLVYQPKFCL 1280

Query: 404  HGGRLLAAEALLRWQHPQRGTLGPDRFIRVAEESGLIVEIGEWVLNEACRQAMLWQAAGL 463
              G L   EALLRWQH + G + P  FI +AEE+G+I +IG WV+N++C+Q   W   G 
Sbjct: 1281 RNGSLTGLEALLRWQHSELGPISPAEFIPLAEETGMINQIGHWVINQSCQQLAEWNELGF 1340

Query: 464  PRFAVAVNLSAVQFRRGNLEAMVHAALNRFGLAPACLELELTESILL---QDSAQ-LRRL 519
               ++AVNLSA Q  + ++ + +  AL   GL    LELELTES+++   Q+S   L +L
Sbjct: 1341 SDISMAVNLSARQL-KADIISTIEVALAVSGLPAKALELELTESMIMGNPQESVNILSKL 1399

Query: 520  KELGVKLSIDDFGTGYSSLSYLQRFQVDKLKIDQSFVRGLTGNAQDQAIVTAIVQMARSL 579
            K LG+ +++DDFGTGYSSLSYL+RF +D LKID+ FVR +T +  D AI +AI+ +A SL
Sbjct: 1400 KALGLTIAVDDFGTGYSSLSYLKRFPIDTLKIDREFVRDITNDPDDAAITSAIIALAHSL 1459

Query: 580  GLHTTAEGIEDEATRALLAELGCDQGQGFLFARPLAATE 618
             L+  AEG+E +     LA  GCDQ QGFL ++PL+A +
Sbjct: 1460 ELNVVAEGVETQEQLNFLALQGCDQVQGFLLSKPLSAQD 1498