Pairwise Alignments

Query, 294 a.a., hypothetical protein from Pseudomonas sp. S08-1

Subject, 306 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  168 bits (426), Expect = 1e-46
 Identities = 110/294 (37%), Positives = 158/294 (53%), Gaps = 21/294 (7%)

Query: 7   TLCMPIARLATLLMLCATALAAE--PLTYPLHSNGADP-EAYVVELLRQALARSG---GD 60
           T C+    L T  ++      AE   + Y L ++  DP ++Y ++LLR A+ +S    GD
Sbjct: 21  TACLITTSLITTCLITTAVARAEVTEVRYNLSTHFVDPKQSYYIDLLRLAMEKSQDQYGD 80

Query: 61  YQLHPSHRPMTQSRAEQSLEQNDGSVQLMWTMTTKAREESLLPVRIPIYKGLIGWRVPLV 120
           Y+L P    M Q R  + +EQ  G + ++WTMT+ +RE  L  V  P+ KGL+G R+ ++
Sbjct: 81  YRLLPVEMDMPQGRTIKLVEQ--GKLDVVWTMTSISRERQLRAVYFPLLKGLMGHRIAII 138

Query: 121 RREDKDWLAKVHSAADLKPLRIGQRADWPDTRILRSNGLQVITSQSYDSLFRMLDAGRFD 180
           R ED+   A +    +L+ + +GQ +DWPD+ IL+  G  ++   ++ SL  ML+ GRFD
Sbjct: 139 RTEDEARFANITQIEELQRIPVGQGSDWPDSDILQRQGFTLVRGAAH-SLLTMLEKGRFD 197

Query: 181 LFPREVVVVWDEQAQAAKAGLNLEVDEHIVIHYPSAFYFFTSRARADLAGHIERGLEAMI 240
            F R +   WDE A   K    L VD   VI YP+  YFF S     L+  IE GL A +
Sbjct: 198 YFLRALHEPWDEIADRPK----LMVDTQFVIVYPAPLYFFVSPDNLALSERIEYGLRAAL 253

Query: 241 ADGSFEALFQQYHGATIE----RAELERRRVIELENPDLPPQTP--FQREELWY 288
           +DGSF+ LF  YH A  E    RA L  RRV  L+NP L   +       ELW+
Sbjct: 254 SDGSFDELF--YHHAITEGMLGRARLTERRVFRLDNPFLSQTSKNLLSEPELWF 305