Pairwise Alignments
Query, 1220 a.a., Methyl-accepting chemotaxis sensor/transducer protein from Pseudomonas sp. S08-1
Subject, 1768 a.a., multi-sensor hybrid histidine kinase (RefSeq) from Shewanella loihica PV-4
Score = 304 bits (779), Expect = 4e-86
Identities = 203/657 (30%), Positives = 334/657 (50%), Gaps = 24/657 (3%)
Query: 376 GFVSDISERKSIEQALRESEQQYRSLIGNIPGVSF--RCLLDDDWTMLFISDAVEKLTGW 433
G + D+++ K ++ + +S+QQ ++ +IP + R + +D F+S A G+
Sbjct: 753 GSIQDVTQSKLAQEKIAQSQQQLETITESIPNTVYQLRWIANDQRYFTFLSRACITTLGF 812
Query: 434 TADDFMSQRKSISSLYHPEDFQLVAEEVLAAIGQGRNYTVEYRLYDRQGVEHWIWESGSA 493
D ++ ++ + + + G + E+R G + W+
Sbjct: 813 HRDQLLANFDLVADCIIESERARIIRALSGESASGLKWIEEFRYQHPTGEQRWLQAGARG 872
Query: 494 VLDEHGEPKWIDGVLLDITDSKLRNAEFESTVTAIRR-----ALLVVEFDLQGNILDANQ 548
+ G W +G L+DI++ K + E R + +V D +G ILD N+
Sbjct: 873 DRQDDGSIVW-NGYLMDISERKQMDRELAKREAHFRALFDNAGIGIVNVDDRGVILDCNE 931
Query: 549 NFLDLMGYRLEEIQGRHHRMFCAQDVAESQEYADFWARLGRGELDSG--EYLRLAKGGRE 606
F + +E ++G F QD + E + + L DS E L + G
Sbjct: 932 QFSQYLQLPIERLKGS--LFFDYQDPEQGLEAKNSFKHLMGDGADSVKLEIRLLNQAGEA 989
Query: 607 VWIQASYNPIFDADGKPFKVIKFATDLSQRREMEEALRDAKEVAELAAAAKTTFLANMSH 666
W+ + + D G+ + D+S + + E L AK+VA+ A+ AK+ FLANMSH
Sbjct: 990 RWMDVNMTGLSDKQGEYRSAVLSMADISSLKLLSEELTQAKDVADAASKAKSDFLANMSH 1049
Query: 667 EIRTPMNAVIGFTELLLDSVLNEQQRRHLGTVRQAARSLLGLLNDILDTAKLERGAVELE 726
EIRTPMNA+IG ++L L + L+++Q+ ++ + +A++SLLG++NDILD +K+E G +++E
Sbjct: 1050 EIRTPMNAIIGMSQLCLQTSLDKKQQNYVEKIDRASKSLLGIINDILDFSKIEAGKLDIE 1109
Query: 727 NRDLSLRELCAQVCDSLRLGAEAKGLSLSLDYQESLGDYFKGDSLRIQQVLTNLVGNAVK 786
L + + D + A K L L ++ + GD LR+ QVL NL+ NA+K
Sbjct: 1110 AVPFQLDTMLEDLSDMFSVKAADKQLELLFAVAPNIPRHLVGDPLRLSQVLINLMNNAIK 1169
Query: 787 FTESGWVRLEVSGVPGQ-----VHFAVRDSGIGIAEDRLQHIFDPFAQADASMSRRFGGT 841
FTE G V L +S + + + F+VRD+GIG+ E++ +F F+QAD+S +R++GGT
Sbjct: 1170 FTEQGEVMLSISQLVREDEEILLKFSVRDNGIGLTEEQRGKLFQSFSQADSSTTRKYGGT 1229
Query: 842 GLGTTIARQLTELMGGSITVESRLGAGSVFHVQLPLQAGVEQLSERSGAERLLPALNILA 901
GLG I +QL ELMGG I VES+ G GS F + + QL + + L + IL
Sbjct: 1230 GLGLAICKQLVELMGGEIGVESQFGNGSTFFFSVRFKVADNQLIK---VAQELEGMRILV 1286
Query: 902 ADDVAQNIELLSLTLGALGHRVTTAGDGEQALAAFVGGRFDVLLMDVQMPRMDGLEATRR 961
ADD A ++L TL ++G V T G +AL+ + V L+D +MP MDGLE RR
Sbjct: 1287 ADDNATARDILRSTLESMGFTVDTVRSGAEALSRCQETDYGVALIDWRMPEMDGLETARR 1346
Query: 962 IRRHEQAHGLRATPIIALTASVLEQDRRAAREAGMDGFASKPLEMDKLLAEIARVIG 1018
+ + T I++ A D+ A +A + G+ +KP+ +LL I +G
Sbjct: 1347 LL--SERTNPPKTLIVSAHADGDFIDK--AEQAEISGYITKPISASRLLDGIMSALG 1399
Score = 144 bits (362), Expect = 9e-38
Identities = 103/402 (25%), Positives = 199/402 (49%), Gaps = 27/402 (6%)
Query: 272 AILETAVDGIVIIDDQGVIEGTNPAVERMYGWGRGELIGRHINTVIPES--YHQGFLDYL 329
A+LE+A + ++I+D+QG + +N ++++G+ +++ +++ ++P+S +H+
Sbjct: 515 AVLESAPEAMLIVDEQGQVVFSNSRCQQLFGYDAQQMLALNVDQLVPDSVKHHEALR--- 571
Query: 330 PRLMREG--RSDIIGGSREVEALRKDGSLLPIRLAIGLV--NLPGKTLYVGFVSDISERK 385
+ + EG R +G + ++A + DGSL P+ +++GL+ + G + D++E
Sbjct: 572 AKFIGEGVDRRMGLGLGKTLKAKKADGSLFPVEISLGLLPADSDGLRQVAASIRDMTEEL 631
Query: 386 SIEQALRESEQQYRSLIGNIPGVSFRCLLDDDWTMLFISDAVEKLTGWTADDFMSQRKSI 445
+ + +++SE ++R L+GNIPG +R L + W M ++SD + ++TG+ A DF+ +K +
Sbjct: 632 ATAKRIKDSESRFRGLVGNIPGAVYRTRLGEQWVMEYVSDNIAEITGYPAADFIENKKRV 691
Query: 446 -SSLYHPEDFQLVAEEVLAAIGQGRNYTVEYRLYDRQGVEHWIWESGSAVLDEHGEPKWI 504
+SL D + + I + +++ V+YR+ R G W+ E G A D+ G W
Sbjct: 692 FASLILEADREATDTAINKGIAEQQSFEVQYRIQHRDGSLRWVHEKGKASYDDEGNALWF 751
Query: 505 DGVLLDITDSKL---RNAEFESTVTAIRRALLVVEFDLQGNILDANQNFLDLMGYRLEEI 561
DG + D+T SKL + A+ + + I ++ + L+ + +Q + +
Sbjct: 752 DGSIQDVTQSKLAQEKIAQSQQQLETITESIPNTVYQLRW--IANDQRYFTFLSRACITT 809
Query: 562 QGRHHRMFCAQ-DVAESQEYADFWARLGR---GELDSG-----EYLRLAKGGREVWIQAS 612
G H A D+ AR+ R GE SG E+ G + W+QA
Sbjct: 810 LGFHRDQLLANFDLVADCIIESERARIIRALSGESASGLKWIEEFRYQHPTGEQRWLQAG 869
Query: 613 YNPIFDADGKPFKVIKFATDLSQRREMEEALRDAKEVAELAA 654
DG + D+S+R++M+ L AK A A
Sbjct: 870 ARGDRQDDGS-IVWNGYLMDISERKQMDREL--AKREAHFRA 908
Score = 105 bits (263), Expect = 3e-26
Identities = 97/351 (27%), Positives = 155/351 (44%), Gaps = 37/351 (10%)
Query: 894 LPALNILAADDVAQNIELLSLTLGALGHRVTTAGDGEQALAAFVGGRFDVLLMDVQMPRM 953
L IL +D N E+ S L +G ++ A +G+ AL FD++LMD QMP M
Sbjct: 1421 LKGKRILLVEDNEMNQEVASEFLEQVGVILSIAENGQVALEKLAMQSFDLVLMDCQMPVM 1480
Query: 954 DGLEATRRIRRHEQAHGLRATPIIALTASVLEQDRRAAREAGMDGFASKPLEMDKLLAEI 1013
DG +AT +R+ + L P+IA+TA+ + D+ AGM+ +KP+E+ L +
Sbjct: 1481 DGYQATAELRKRPE---LADLPVIAMTANAMAGDKEMCLRAGMNDHIAKPIEVSLLYKTL 1537
Query: 1014 ARVIGLAPTVEQAAAVDVSADLAID--WP--------RGIQLWGSQQAMAAAIRRFLDEH 1063
+G V + + + + + D WP +G+QL + + I
Sbjct: 1538 LEYLGDDSQVIEETSTEQTDQHSQDAYWPQHPALDIDKGLQLVQNSARLYRRIFERFYTG 1597
Query: 1064 AGSCAE-VAGLLQDNHREAAIELVHRLRGAAGNLALLRASRLAGQLEHALKGAIPASVDD 1122
CAE +A ++ +E A+ H L+G AGNL LA Q+E L +I A V +
Sbjct: 1598 QSRCAELIATAQREGKQEEAVRYAHTLKGVAGNLCCPELVALAKQVEQTLSDSIEADVTE 1657
Query: 1123 LLAALQAALAALPV-------ELPLPATVQESSASA--------MPAAELAELVEHARAA 1167
L + L +L + QE A A M A EL ++
Sbjct: 1658 ALTQMGELLDSLCTTIGDWLSQTGAETLPQEDGAEAGATADAPPMSAQELDAAIKELLKM 1717
Query: 1168 LQHGELDEEALQRLSA---ALPARQAHALE---GAINDFDFERADALLAEL 1212
L+ E D EA+++L A LP A+ + +N + F+ A L+ E+
Sbjct: 1718 LE--EADAEAVEKLQAIRDRLPTSLANKIAPVLNMVNAYQFDEAIELVEEI 1766
Score = 40.0 bits (92), Expect = 2e-06
Identities = 71/325 (21%), Positives = 132/325 (40%), Gaps = 48/325 (14%)
Query: 357 LPI-RLAIGLVNL-PGKTLYV----GFVSDI-------SERKSI----EQALRESE-QQY 398
LPI RLA G+V GKT ++ G V+++ +E + EQAL +S ++
Sbjct: 333 LPIERLAAGIVAFGAGKTKHIEGTRGAVTEVETLTDKFNELAEVLAQREQALLDSRGNRF 392
Query: 399 RSLIGNIPGVSFRCLLDDDWTMLFISDAVEKLTGWTADDFMSQRKSISSLYHPEDFQLVA 458
LI + SF C L+ D + +S VEK+ G + D ++ ++
Sbjct: 393 AKLIDGMSDKSFYCSLEPDGQIAQVSAGVEKVLGVSPD---LLKRKYQRMFSDNPINEAN 449
Query: 459 EEVLAAIGQGRNYTV-EYRLYDRQGVEHWIWESGSAVLDEHGEPKWIDGVLLDITDSKLR 517
E + + QG + + + G + +L ++GE I+ + D+T+
Sbjct: 450 WEYMDSALQGNSVPPHQVEMIAANGSVRRLDLFMQPLLSDNGELLSIEMLFNDVTEQFSA 509
Query: 518 NAEFESTVTAIRRALLVVEFDLQGNILDANQNFLDLMGYRLEEIQG-----------RHH 566
A + + + A+L+V D QG ++ +N L GY +++ +HH
Sbjct: 510 AAWSNAVLESAPEAMLIV--DEQGQVVFSNSRCQQLFGYDAQQMLALNVDQLVPDSVKHH 567
Query: 567 RMFCAQDVAESQEYADFWARLGRGELDSGEYLRLAKGGREVWIQASYNPIFDADGKPFKV 626
A+ + E + R+G G G+ L+ K ++ + AD +
Sbjct: 568 EALRAKFIGEGVD-----RRMGLG---LGKTLKAKKADGSLFPVEISLGLLPADSDGLRQ 619
Query: 627 IKFATDLSQRREMEEALRDAKEVAE 651
+ + R+M E L AK + +
Sbjct: 620 V-----AASIRDMTEELATAKRIKD 639
Score = 38.9 bits (89), Expect = 4e-06
Identities = 38/158 (24%), Positives = 70/158 (44%), Gaps = 17/158 (10%)
Query: 370 GKTLYVGFVSDISERKSIEQALRESEQQYRSLIGN----IPGVSFRCLLDD--DWTMLFI 423
G ++ G++ DISERK +++ L + E +R+L N I V R ++ D + ++
Sbjct: 878 GSIVWNGYLMDISERKQMDRELAKREAHFRALFDNAGIGIVNVDDRGVILDCNEQFSQYL 937
Query: 424 SDAVEKLTGWTADDFMSQRKSISSLYHPEDFQLVAEEVLAAIGQGR-NYTVEYRLYDRQG 482
+E+L G D+ PE +G G + +E RL ++ G
Sbjct: 938 QLPIERLKGSLFFDYQD----------PEQGLEAKNSFKHLMGDGADSVKLEIRLLNQAG 987
Query: 483 VEHWIWESGSAVLDEHGEPKWIDGVLLDITDSKLRNAE 520
W+ + + + D+ GE + + DI+ KL + E
Sbjct: 988 EARWMDVNMTGLSDKQGEYRSAVLSMADISSLKLLSEE 1025