Pairwise Alignments

Query, 304 a.a., Inner membrane protein YedI from Pseudomonas sp. RS175

Subject, 307 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  347 bits (890), Expect = e-100
 Identities = 181/312 (58%), Positives = 232/312 (74%), Gaps = 21/312 (6%)

Query: 1   MAGSSLLVLIDDIATVLDDVALMTKMAAKKTAGVLGDDLALNAQQVSGVRAERELPVVWA 60
           MAG+SLL L+DDIA +LDDVALM+K+AA+KTAGVLGDDLALNAQQVSGV A+RELPVVWA
Sbjct: 1   MAGASLLTLLDDIAAILDDVALMSKVAARKTAGVLGDDLALNAQQVSGVNADRELPVVWA 60

Query: 61  VAKGSFINKLILVPSALAISAFVPWLVTPLLMVGGAYLCFEGFEKLAHKFL--HSPAEDQ 118
           VAKGS  NK ILVP+AL ISAF+PW VTPLLM GG +LC+EGFEK+ H     H PA  Q
Sbjct: 61  VAKGSLRNKCILVPAALLISAFIPWAVTPLLMFGGLFLCYEGFEKVYHSLTHKHEPAMSQ 120

Query: 119 AEHEQLVEAVADPAVDLVAFEKDKIKGAVRTDFILSAEIIAITLGTVADAPLTQQVIVLS 178
           +E       +A  A DL AFEK K+ GA+RTDF+LSAEIIAITLG VA++    QV+ L+
Sbjct: 121 SE-------MAKAAEDLKAFEKQKVAGAIRTDFVLSAEIIAITLGVVAESSFMTQVVTLA 173

Query: 179 GIAIVMTVGVYGLVAGIVKLDDLGLWLTQKPG-----QAAKSIGGAILSAAPYMMKSLSV 233
            IA++MTVGVYGLVAGIVKLDD GL+L+Q+ G     +  + +GG +++AAPY+M+ L+V
Sbjct: 174 IIAVLMTVGVYGLVAGIVKLDDAGLYLSQRQGDGLLRRLGRKLGGGLVNAAPYLMRGLTV 233

Query: 234 IGTAAMFLVGGGILTHGVPVV-------HHWIEGVATSAGGAGFIVPMLLNAVAGIVAGA 286
           +GT AMF+VGGGILTHG+  +        HW+ G+        ++ P LLNA+ G++ GA
Sbjct: 234 VGTIAMFMVGGGILTHGIHQIAEVFEQAAHWVAGLTIVGPVLAWMTPSLLNALFGVLVGA 293

Query: 287 AVLAGVMVVGKV 298
             L  + ++G++
Sbjct: 294 VALVVMSLIGRL 305