Pairwise Alignments

Query, 448 a.a., Multidrug export protein MepA from Pseudomonas sp. RS175

Subject, 455 a.a., MATE efflux family protein (RefSeq) from Shewanella loihica PV-4

 Score =  120 bits (301), Expect = 9e-32
 Identities = 106/424 (25%), Positives = 196/424 (46%), Gaps = 12/424 (2%)

Query: 3   AQPLWKTYLLFLTPMVLSNFLQSMSGTFNSIYIGQMLGTQALAAVSGMFPVLFFFIALVI 62
           +QP+ +  L    P ++           ++ +I Q LGT+ALAA+S  FPV     ++ I
Sbjct: 9   SQPIGRVLLNMSLPNLIGILTILGFSLVDTFFISQ-LGTEALAAISFTFPVTLIVSSIAI 67

Query: 63  GLGAGAGVLIGQAYGAQETGKVKAIAGATLLLGAIIGLVAAVLGSVFARDALHGLGTPAD 122
           G+GAG    +G+  G+  + K K      LL+   +    ++LGS+F       LG   D
Sbjct: 68  GIGAGVSTNLGRLIGSGNSPKAKVFLHDALLITFWLIAALSLLGSLFIGPLFTLLGANDD 127

Query: 123 VLDDAVSYARVMMWIL--PILLVFVLFTQLLRGVSDTLSPLLALLVSTGVGLVLTPALIR 180
            L     Y  + +W L  P+L++ ++  Q LR   DT SP   + ++  + LVL P LI 
Sbjct: 128 SLPLIRDY--MFLWYLGAPLLVLLMVGNQGLRATGDTKSPAKIMALAAVINLVLDPLLIF 185

Query: 181 GWLGLPQMGIQSAAMAGLVGTTAAMAMLAWRLTRRQNVLAPDRALFAAMRLDR--AILAK 238
           G    P++ IQ AA+A L+    A+++  + L  ++N++      FA   L+R      +
Sbjct: 186 GLGPFPRLEIQGAAIATLISWVVALSLSGYLLIIKRNLVD-----FAEFNLERIHCNWRQ 240

Query: 239 VLRIGLPTGLQMVVISLSELVILALVNRHGSEATAAYGAVTQIVNYVQFPALSIAITASI 298
           +  I  P  L  ++  ++  +I+A++ R    A AA+GA T++ + +    ++++ +   
Sbjct: 241 LAHIAQPAALMNLLNPVANAIIMAMLARIDHSAVAAFGAGTRLESVLLIAVMALSSSLVP 300

Query: 299 LGAQAIGAGRLERLGPILRTGLIINLWLTGGLVLLGYLLSHWLLGLFITDPTARVQAEHL 358
             AQ +GAG+ ER    L   L   L     + L   L++  +  LF  DP         
Sbjct: 301 FIAQNLGAGQTERARDALMLSLRFVLVFQTLIYLPLALMATPIAQLFSKDPQVIEWLSFY 360

Query: 359 LHIMLWSLLVFGFQAIVGGIMRAGGTVLLPVTISIFCIVGVQVPAAYLLDAYFGLQGVWM 418
           +  +  +    G   +    + A    +  + +++  +  + +P A L     G++G+ +
Sbjct: 361 IIALPAAYGPLGMVILTATSLNAYHRPMSSLVLNVCRLFLLLLPLAALGSYLGGVKGLLL 420

Query: 419 AFPV 422
           A P+
Sbjct: 421 ALPI 424



 Score = 39.3 bits (90), Expect = 3e-07
 Identities = 30/106 (28%), Positives = 46/106 (43%)

Query: 231 LDRAILAKVLRIGLPTGLQMVVISLSELVILALVNRHGSEATAAYGAVTQIVNYVQFPAL 290
           L + I   +L + LP  + ++ I    LV    +++ G+EA AA      +   V   A+
Sbjct: 8   LSQPIGRVLLNMSLPNLIGILTILGFSLVDTFFISQLGTEALAAISFTFPVTLIVSSIAI 67

Query: 291 SIAITASILGAQAIGAGRLERLGPILRTGLIINLWLTGGLVLLGYL 336
            I    S    + IG+G   +    L   L+I  WL   L LLG L
Sbjct: 68  GIGAGVSTNLGRLIGSGNSPKAKVFLHDALLITFWLIAALSLLGSL 113