Pairwise Alignments

Query, 294 a.a., Protein RarD from Pseudomonas sp. RS175

Subject, 295 a.a., chloramphenical resistance permease RarD from Pseudomonas fluorescens FW300-N2E3

 Score =  139 bits (349), Expect = 1e-37
 Identities = 91/298 (30%), Positives = 153/298 (51%), Gaps = 15/298 (5%)

Query: 1   MSKGIALSVSASALFAVMYYYTSLLSPLTGLEIFGWRMLLTMPCMTVFMLVAREWHLVTA 60
           + +G  L +SA  ++ +   Y   ++ +  +EI   R+L +     + ++V +       
Sbjct: 6   LRRGYILGLSAYIIWGLFPLYFKAIADVPAVEIIIHRVLWSALFGALLLMVWKH----PG 61

Query: 61  LIRRLVATPRLLIAAIASSALMGAQLWLFMWAPLNGYSLDVSLGYFLLPLSMVLTGRIVY 120
             R L   PR L     S  L+ A    ++WA  NG  L+ SLGY++ PL  VL G ++ 
Sbjct: 62  WWRELRENPRRLAVLALSGTLIAANWLTYVWAVNNGRMLEASLGYYINPLVNVLLGMLIL 121

Query: 121 GERLSYLQKVAVFFATLGVFNELYQVGGFSWATLLVVLGYPLYFILRKRTKTHNLGGLWL 180
           GERL  LQ VAV  A +GV  +++QVG   W +L++ L +  Y ++RK+     L GL +
Sbjct: 122 GERLRRLQWVAVGLAAVGVAQQVWQVGSLPWVSLVLALTFGFYGLIRKQAPVKALPGLVV 181

Query: 181 DMTLILPLAL-WFV-----QSGEQGFEVFNQYPWLSLLIPLLGVISVSALVCYIVASRLL 234
           +  +++P+AL W +      S +  F   ++  WL       G +++  LVC+  A+R L
Sbjct: 182 ETWMLVPIALAWLLFNPTATSAQAAFWTTSEAWWL----VAAGPVTLVPLVCFNAAARHL 237

Query: 235 PFSLFGLLSYVEPVL-LLGVALLLGESIKATEWLTYIPIWMAVAVLVFEGFKHLMRQR 291
           P++  G L Y+ P L LL   LL GE + +T  + ++ IW  +AV   + +  L R+R
Sbjct: 238 PYTTLGFLQYLAPTLVLLQAVLLFGEHLSSTTLVAFMFIWAGLAVYSVDAWMSLRRRR 295