Pairwise Alignments

Query, 345 a.a., hypothetical protein from Pseudomonas sp. RS175

Subject, 343 a.a., helix-turn-helix domain containing protein, AraC type from Marinobacter adhaerens HP15

 Score = 72.0 bits (175), Expect = 2e-17
 Identities = 64/309 (20%), Positives = 124/309 (40%), Gaps = 3/309 (0%)

Query: 34  DSHRLLRGTGLFHDDILAGRSRISPQQFLGLIENSRRLLDASDSSFLFGQRLLPGHYGPA 93
           D+  +LR  G+  D +    +R+S  QF  L++     +   +   L  +R   G +   
Sbjct: 28  DTREMLREAGISPDLLRIEMARVSSDQFSHLMQVLWNRM-GDEFMGLGPRRARTGTFATM 86

Query: 94  SHALRHAPNLHQALQTLIEQQALLSPLAAPRLLLDEHYAYVHWLDSCGAHDQWRFVLEAS 153
              +   PNL    +   +   L  P+ +  L + E  A +        +D   F+ E+ 
Sbjct: 87  CALVIDCPNLESVYRQAFQFSRLFEPMVSMELEIGEDKARLVARMEGEINDPSFFLRESI 146

Query: 154 MTSMIAMSTWLSGERLPWQ-CSFRHSEPRYVEQYWVHLGEQTQFDRPLDLMRLPRHCLAQ 212
           +     + +WL G+ +  +   F +  P + ++Y         F+     +   +  L+ 
Sbjct: 147 LVIWHRLGSWLIGQPIELEKAEFDYPRPPHGDEYRHIFHCPLAFESDRIALTFDKRFLSA 206

Query: 213 PWPDASATAGQVARIEAREQLDHLGFTASFLDCVYEYL-RAHVRQTPSLEQTAQAFAMSP 271
           P         Q  +    + L     + +F   +   + R   +  P  E  A     SP
Sbjct: 207 PVIRDKPEMRQFLKTSPADLLSRPDESNTFTGRIRALIGRDFSKPLPDFEWIAAELHTSP 266

Query: 272 ATLKRKLHKHHTGFQQQVDRVHTHVALYLYQVKGFSNEEVAQYLSFNDTANFRRSFKRWT 331
            TL+R+L + +T FQ+  D +   +A+Y    +     ++A  + F + + F R+FK+WT
Sbjct: 267 QTLRRRLKQENTSFQEIKDLLRRDMAIYYLSRQDLPINDIAAKVGFTEPSTFHRAFKKWT 326

Query: 332 GSTPNLIRQ 340
           G TP   R+
Sbjct: 327 GVTPGAYRE 335