Pairwise Alignments

Query, 610 a.a., hypothetical protein from Pseudomonas sp. RS175

Subject, 622 a.a., ABC transporter, periplasmic substrate-binding protein from Pseudomonas fluorescens FW300-N1B4

 Score =  447 bits (1151), Expect = e-130
 Identities = 245/604 (40%), Positives = 345/604 (57%), Gaps = 18/604 (2%)

Query: 4   PLLLFLISLALSSPAGAAISESHGYAQFGT-LKYPARFTHFDWVNPQAPKGGTLR--VMA 60
           P LLF     L S AG   +  H    +G   KYPA F+HF + NP+APKGGT+R   M 
Sbjct: 6   PTLLFTAVALLLSAAGVNAAPQHALTVYGEPAKYPAGFSHFAYTNPRAPKGGTMRRSAME 65

Query: 61  FGTFDTLNPYTFKGSSPVSTPNFLQYGINELNEPLMVGTGQYAPSGDEPTSSYGLIAQSV 120
            G FD + PY  KG+           G+ +++  +     Q   S DEP + YGL+AQ +
Sbjct: 66  IGHFDHMLPYIDKGT-----------GVTQIDGLIYSPLAQR--SLDEPYTVYGLVAQRM 112

Query: 121 EYSDDRSWVVFNLRPEARFHDGVPITAYDVAFSYRTLLKEGHPLYRTNLQEVLRVDILNP 180
           E SDD   + F L P+ARF DG PITA DV +++  L+ +G   YRT   +V  V++ +P
Sbjct: 113 ERSDDGLSLHFYLNPKARFADGKPITAEDVRYTFNLLMTQGSLRYRTQFADVKGVEVESP 172

Query: 181 LKIRFVFKRAGNPLLILRLGELPVLPQHYWKDRDFKATT-FEPPLGSGPYRITQVQPGRQ 239
           L +RF FK   N  L L L  LPV P+H+WK RDF +   +EPPLGSGPYR+++V  GR 
Sbjct: 173 LTVRFDFKSNENRTLPLDLATLPVFPEHWWKTRDFASGGGYEPPLGSGPYRVSKVDSGRS 232

Query: 240 LVFERVKDYWGKDLPVNRGKYNYDRMEVEFYRDSDVAFEAFKAGEFDIYIEHQAKNWANG 299
           + FER  D+W KDLPV+RG YN+D   +E++ D+DVA +  + G +D   E  A  ++ G
Sbjct: 233 ITFERNADWWAKDLPVSRGLYNFDHFSIEYFGDTDVARQVLRGGAYDYNREFSATAYSIG 292

Query: 300 YDFPAVKRGDVIKAQIPHRIPTQTQGLFMNTRRGTFADARVREALGLMFDFEWTNRTLFS 359
           Y+ PA+  G + KA +    P   QG   N +   F D RVR+AL +++DFEW+NR +  
Sbjct: 293 YESPALSDGRLQKAHLAKEAPQSAQGFVFNLQNPMFQDRRVRQALAMLWDFEWSNRQMMR 352

Query: 360 GAYKRTLSYYPNSEFSASGLPVGHEWLLLKPYREQLPPRLFTEPFSLPQTDGRGIPRDTL 419
             Y R  SY+ N++ +A  LP   E  +L+P R Q+P  +FT+ F  P+TDG G+ RD  
Sbjct: 353 EMYIRQQSYFSNTDLAARELPDAGERAILEPLRGQIPDEVFTQVFEAPKTDGSGVIRDKQ 412

Query: 420 RRALALLKEAGWTLNGQRLLNADSQPLRFEILLVNPNLERILQPYVGNLASIGIQARLRT 479
            +AL LL++AGW  +G +L+NA  Q L F  L+    ++R+L PY   L  IGI   +R 
Sbjct: 413 LQALGLLEQAGWKPDGDQLVNAQGQSLSFTFLVSQNGMDRLLLPYKRTLKQIGIDLNIRR 472

Query: 480 VDRAQYKQRLDQFDFDMILLTLGQTLSPGLEQWQYFHSSQASVKGSKNYAGIANPVVDHL 539
           +D +QY  RL   D+DMI+     T SPG E + YF S+ A+  GS NY  + NP VD L
Sbjct: 473 IDASQYINRLMSRDYDMIVTGYPVTTSPGNELYNYFGSAAANDPGSNNYMVLKNPAVDTL 532

Query: 540 LEKLLAARTRDEQVAAGKALDRVLLWQHYCIPNWYLNYHRLAYHDRFAFVTTPPYT-LGL 598
           +  L+ A T+ + +    ALDRVL W  Y IPN+Y       + +RF   +        +
Sbjct: 533 VNGLVRATTQADMLRYAHALDRVLQWNFYWIPNYYPPGSSTVWWNRFGIPSVQASNDEAI 592

Query: 599 SAWW 602
            +WW
Sbjct: 593 ESWW 596