Pairwise Alignments

Query, 610 a.a., hypothetical protein from Pseudomonas sp. RS175

Subject, 610 a.a., Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) from Pseudomonas fluorescens FW300-N1B4

 Score = 1140 bits (2949), Expect = 0.0
 Identities = 551/608 (90%), Positives = 575/608 (94%)

Query: 3   RPLLLFLISLALSSPAGAAISESHGYAQFGTLKYPARFTHFDWVNPQAPKGGTLRVMAFG 62
           RPLLL LISLALSSPA A ISESHGYAQFGTLKYPARFTHFDWVNPQAPKGGTLRVMAFG
Sbjct: 3   RPLLLLLISLALSSPASATISESHGYAQFGTLKYPARFTHFDWVNPQAPKGGTLRVMAFG 62

Query: 63  TFDTLNPYTFKGSSPVSTPNFLQYGINELNEPLMVGTGQYAPSGDEPTSSYGLIAQSVEY 122
           TFDTLNPYTFKGSSPVST NFLQYGINELNEPLMVGTGQYAPSGDEPTSSYGLIAQSVEY
Sbjct: 63  TFDTLNPYTFKGSSPVSTANFLQYGINELNEPLMVGTGQYAPSGDEPTSSYGLIAQSVEY 122

Query: 123 SDDRSWVVFNLRPEARFHDGVPITAYDVAFSYRTLLKEGHPLYRTNLQEVLRVDILNPLK 182
           S+DRSWVVFNLRPEARFHDG PITAYDVAFSYR LLKEGHP YRTNLQEV RVDILNP +
Sbjct: 123 SEDRSWVVFNLRPEARFHDGTPITAYDVAFSYRLLLKEGHPQYRTNLQEVSRVDILNPRR 182

Query: 183 IRFVFKRAGNPLLILRLGELPVLPQHYWKDRDFKATTFEPPLGSGPYRITQVQPGRQLVF 242
           IRFVFKR+GNPLLILRLGELPVLPQHYWK RDFKATTFEPPLGSGPYRIT V PGRQ+VF
Sbjct: 183 IRFVFKRSGNPLLILRLGELPVLPQHYWKGRDFKATTFEPPLGSGPYRITSVTPGRQIVF 242

Query: 243 ERVKDYWGKDLPVNRGKYNYDRMEVEFYRDSDVAFEAFKAGEFDIYIEHQAKNWANGYDF 302
           ERVKDYWGKDLPVNRGKYN DRMEVEFYRDSDVAFEAFKAGEFDIYIEHQAKNWANGY+F
Sbjct: 243 ERVKDYWGKDLPVNRGKYNVDRMEVEFYRDSDVAFEAFKAGEFDIYIEHQAKNWANGYNF 302

Query: 303 PAVKRGDVIKAQIPHRIPTQTQGLFMNTRRGTFADARVREALGLMFDFEWTNRTLFSGAY 362
           PAV+RGDVIKAQI H+IPTQ+QGLFMN+RR TFA+A+VREALGLMFDFEWTNRTLFSGAY
Sbjct: 303 PAVRRGDVIKAQIAHQIPTQSQGLFMNSRRPTFAEAKVREALGLMFDFEWTNRTLFSGAY 362

Query: 363 KRTLSYYPNSEFSASGLPVGHEWLLLKPYREQLPPRLFTEPFSLPQTDGRGIPRDTLRRA 422
           KR +SYYPNSEFSA+GLPVGHEWLLLKPYR+QLP +L TEPFSLPQT+GRGIPR+T+R+A
Sbjct: 363 KRAMSYYPNSEFSATGLPVGHEWLLLKPYRDQLPAKLLTEPFSLPQTEGRGIPRETMRKA 422

Query: 423 LALLKEAGWTLNGQRLLNADSQPLRFEILLVNPNLERILQPYVGNLASIGIQARLRTVDR 482
           L LL EAGW LNGQRL N   QPLRFEILLVNPNLERILQPYV NLASIGI ARLRTVDR
Sbjct: 423 LELLAEAGWKLNGQRLQNTIGQPLRFEILLVNPNLERILQPYVENLASIGIDARLRTVDR 482

Query: 483 AQYKQRLDQFDFDMILLTLGQTLSPGLEQWQYFHSSQASVKGSKNYAGIANPVVDHLLEK 542
           AQYKQRLDQFDFDMIL+TL QTLSPGLEQWQYFHSSQ  VKGSKNYAGIANPVVDHLLE+
Sbjct: 483 AQYKQRLDQFDFDMILMTLNQTLSPGLEQWQYFHSSQVGVKGSKNYAGIANPVVDHLLEQ 542

Query: 543 LLAARTRDEQVAAGKALDRVLLWQHYCIPNWYLNYHRLAYHDRFAFVTTPPYTLGLSAWW 602
           LLAA+TRD QVAAGKALDRVLLWQHY IPNWYLNYHRLAY +RFAFVTTPPYTLGLSAWW
Sbjct: 543 LLAAQTRDAQVAAGKALDRVLLWQHYIIPNWYLNYHRLAYRNRFAFVTTPPYTLGLSAWW 602

Query: 603 LKSSEKDQ 610
           LKSSEKD+
Sbjct: 603 LKSSEKDR 610