Pairwise Alignments

Query, 610 a.a., hypothetical protein from Pseudomonas sp. RS175

Subject, 639 a.a., ABC transporter, periplasmic substrate-binding protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  433 bits (1114), Expect = e-126
 Identities = 243/580 (41%), Positives = 338/580 (58%), Gaps = 30/580 (5%)

Query: 40  FTHFDWVNPQAPKGGTLRVMAFGTFDTLNPYTFKGSSPVSTPNFLQYGINELNEPLMVGT 99
           F H   VNP+APKGGTLR+   G FD+L+P+  +G          Q G+    E L    
Sbjct: 53  FAHMPHVNPEAPKGGTLRLGVIGGFDSLHPFIMRGIPAA------QLGLTY--ETL---- 100

Query: 100 GQYAPSGDEPTSSYGLIAQSVEYSDDRSWVVFNLRPEARFHDGVPITAYDVAFSYRTLLK 159
           G+  P  D     YGL+A+S E S D   +V +L P ARF DG P+TA DV FS+  L +
Sbjct: 101 GETVPGEDGVI--YGLLAESFEESADGGHLVCHLAPAARFADGHPVTAADVVFSFEMLTR 158

Query: 160 EGHPLYRTNLQEVLRVDILNPLKIRFVFKRAGNPLLILRLGELPVLPQHYWKDRDFKATT 219
            G P YR     V  V  ++   +RF F    N  L   + +LPVLP+H+W+ RDF A  
Sbjct: 159 HGSPFYRDYYAGVGTVTAVDARTVRFDFTSRHNAELPYIVAQLPVLPRHWWQGRDFTAPQ 218

Query: 220 FEPPLGSGPYRITQVQPGRQLVFERVKDYWGKDLPVNRGKYNYDRMEVEFYRDSDVAFEA 279
            E   GSGPYR+ + +PG  + +ERV  +WG  LP+NRG+YN+D +  ++YRD+ VA +A
Sbjct: 219 AEAAPGSGPYRVREARPGSGITYERVPGWWGAKLPINRGRYNFDVIRCDYYRDTTVARQA 278

Query: 280 FKAGEFDIYIEHQAKNWANGYDFPAVKRGDVIKAQIPHRIPTQTQGLFMNTRRGTFADAR 339
           F AGEFD++ E+  K+W   YD P+V+ G + + +IPH  P    G   NTRR  FAD R
Sbjct: 279 FLAGEFDLWNENTIKDWFASYDVPSVREGRITREEIPHGRPEGMGGFVFNTRRAIFADVR 338

Query: 340 VREALGLMFDFEWTNRTLFSGAYKRTLSYYPNSEFSASGLPVGHEWLLLKPYREQLPPR- 398
           VR AL + FDFEWTNR LF  AY+R  S++ NS F+A+G     E  LL   RE  P R 
Sbjct: 339 VRRALAMCFDFEWTNRALFHDAYRRYDSFFSNSPFAATGTATEGERALL---REVSPERA 395

Query: 399 -LFTEPFSLPQT-DGRGIPRDTLRRALALLKEAGWTLNGQRLLNADSQPLRFEILLVNPN 456
            + + P  LP T DG G  R  LR AL L+ +AGW L   RL++A  +P RF +LL +  
Sbjct: 396 AMLSGPPPLPATHDGSGDIRPVLRDALRLMHDAGWNLRDGRLVDASGRPFRFTLLLSSKG 455

Query: 457 LERILQPYVGNLASIGIQARLRTVDRAQYKQRLDQFDFDMILLTLGQTLSPGLEQWQYFH 516
           LER++ P+  NL+ +G++  ++ VD+ QY  R+  FD+DM+  T+ Q+ +PG EQ  ++ 
Sbjct: 456 LERVVLPFRRNLSRLGVEMDVQVVDQTQYVSRVRAFDYDMVHATMRQSSNPGNEQRAFWT 515

Query: 517 SSQASVKGSKNYAGIANPVVDHLLEKLLAARTRDEQVAAGKALDRVLLWQHYCIPNWYLN 576
           ++ A   GS+NYAG+ +  VD L+E+++AAR       A  ALDRVLL +HY +P WY +
Sbjct: 516 TAAADAPGSRNYAGVRDTAVDALVERIIAARDAATLRDAVHALDRVLLHEHYVVPGWYSD 575

Query: 577 YHRLAY------HDRFAFVTTPPYTLGLSAWWLKSSEKDQ 610
             R+AY      H  F    TP   + L +WW  S +  Q
Sbjct: 576 RQRMAYWKTRVAHPAF----TPRGGIDLHSWWAVSGDDTQ 611