Pairwise Alignments

Query, 521 a.a., Aerotaxis receptor from Pseudomonas sp. RS175

Subject, 516 a.a., PAS domain-containing protein from Rahnella sp. WP5

 Score =  242 bits (617), Expect = 3e-68
 Identities = 181/530 (34%), Positives = 272/530 (51%), Gaps = 52/530 (9%)

Query: 1   MRNNQPVTQRERTFPAQQRLISTTNAKGVITYCNDAFVEISGFSKEELIGSPHNLVRHPD 60
           MR N P++QRE        L+STT+    I Y N AF+ +SGFS++EL   PHNLVRHPD
Sbjct: 1   MRVNMPISQREYKLDPGTTLMSTTDVNSHIIYANSAFINVSGFSEDELTFRPHNLVRHPD 60

Query: 61  VPSAVFAHMWNTLKQGLPWMGIVKNRCKSGDHYWVNAYVTPIFEGNQVIGYESVRVKPTA 120
           +P   FA MW TL+QG  W G+VKNR K+GDHYWV A VTP++  +++ GY SVR  P  
Sbjct: 61  MPVEAFADMWFTLQQGDSWTGLVKNRRKNGDHYWVRANVTPVYHLDKLTGYISVRNTPAE 120

Query: 121 EQVSRAEALYRRINQGKPAVPRSDKWLPILQDWLPFILVSQ---------LSFIVGA--- 168
           ++V  AE LY+++ +      +  K L I      F+ + Q         L   + A   
Sbjct: 121 QEVKAAEELYKQVKEKSTGRRKFYKGLVIHTGLFSFLSLLQKLPVSWRLRLPLFISALFP 180

Query: 169 FLNSSWGFAL--AALLSVPLGL---MGLQWQQRG-IKRLLRLAEQTTSDPLIAQMYTDSR 222
            L S  G  L  +A+++V L L   + LQ Q R  IK +L  A+Q  S    A ++ +  
Sbjct: 181 LLFSLAGINLTESAIVTVILLLAADLFLQSQIRNPIKTILAQAQQVVSGKKAAYVHFNRV 240

Query: 223 GVQARLEMSILSQEARLKTCLTRLQDTAEHLNDQARQSNALAHNSSSGLERQRVETEQVA 282
                L  S+      L +    ++D    +   A  S  +A NS++   R    TE+ A
Sbjct: 241 DEIGLLMRSVNQFGLNLHSL---VEDVGTQVGGIAHISELMAKNSTALSAR----TEETA 293

Query: 283 TAVNQMAATTQEVASHVQRTADATQEANRLTGRGRDIAGETREAIERLSVVVGETGQTVT 342
           T + Q AA  +E+   V++++D   +A++L      +A       ++   ++ ET   + 
Sbjct: 294 THLQQTAAAIEEITGAVEQSSDTVVQASKLADSATTVA-------QKGGKIMQETIGMMQ 346

Query: 343 QLAKDSDEIGGVVDVIKGIADQTNLLALNAAIEAARAGEMGRGFAVVADEVRQLAQRTSE 402
            ++  S ++  ++ VI  IA QTN+LALNAA+EAARAG  GRGFAVVA EVR LAQR++ 
Sbjct: 347 SISHASSKVVDIISVIDSIAFQTNILALNAAVEAARAGTEGRGFAVVAAEVRVLAQRSAT 406

Query: 403 STGQIHALIAKLQQTANNAVQTMDAGHRQAEEGVARVMEADQALVGISEAVANITDMT-- 460
           +  +I  LI    +T  ++V+T   GH     G             ISE +A +  M+  
Sbjct: 407 AAKEIKTLI----ETNMHSVET--GGHMVENAGKQ-----------ISEIIAEVVQMSGL 449

Query: 461 -TQIAAATEEQSSVAEEISRNISNISELADQTSDQAHNSALLSEELTRTA 509
             +I+ AT EQ+S    I+ +++ I  +    +     S+  SE L   A
Sbjct: 450 IKEISHATHEQTSALTLINTSLAQIETMTQNNAGMVAQSSESSERLNYQA 499