Pairwise Alignments

Query, 380 a.a., Outer membrane protein assembly factor BamB from Pseudomonas sp. RS175

Subject, 395 a.a., outer membrane protein assembly complex subunit YfgL (RefSeq) from Shewanella loihica PV-4

 Score =  234 bits (597), Expect = 3e-66
 Identities = 132/386 (34%), Positives = 195/386 (50%), Gaps = 14/386 (3%)

Query: 7   AALLALAILAAGCSSNSKKELPPAELTDFKEEVVLQKQWSRSIGDGQGETYNMLVPAIDG 66
           A  L+L +L+A CSSN  +E P + L   +  V  +  WS S+G G G+ Y+ + PA+  
Sbjct: 10  ACSLSLGLLSA-CSSNDVEEEPVSPLPQIEASVFPEVSWSASVGSGVGDYYSKIRPAVRY 68

Query: 67  DTIYAGDVTGVVMAMDRMNGDVKWEKDLE-------------LPVSGAVGVGYGLVMIGT 113
             ++  D  G V A D   G+  W  ++                +S  +      V  G 
Sbjct: 69  GKLFVMDRYGEVAAYDEATGEQVWSLEISSWFKEGALSKNKGARLSSGITAARNKVFFGG 128

Query: 114 LKGEIVALDASSGEEKWRARVTSEVLAPPATNGDVVVVQTQDDRLIGLDAATGSQRWLYD 173
             G + A+DA +GE  W      E+L+ P    DVVVV T    L   +   G Q W+Y+
Sbjct: 129 ESGLLGAVDAETGEMVWHVTAGGELLSAPTVGEDVVVVHTSTGALEAYNVDDGKQLWVYE 188

Query: 174 STPAVLTLRGTSAPIVTNRLAVAGLSTGKVVALDVSNGVPVWEQRVAIPQGRSELERVVD 233
           S    LTLRGT +          G + GKV  +  SNG   WEQ +  P+G +E  R+ D
Sbjct: 189 SKLPTLTLRGTGSAAYEAGGFFVGTADGKVAVVVKSNGQAAWEQPIYTPKGGNEFTRMAD 248

Query: 234 IDGGLLLSGGTLYVASYQGRVAALDLETGRPLWQRDASSYAGVAQGFGSVYVSLASGTVE 293
           +D   L+ G  +Y  SY G + +++L TGR +W R  SS+  +A    ++Y+    G V 
Sbjct: 249 VDMKPLIVGENIYAVSYNGNLVSMELRTGRVVWSRKYSSFNELASAGLNLYLVDDHGRVY 308

Query: 294 GVDERSTTALWSNDSLARRQLSAPEVFSSYVAVGDLEGYLHLLSQVDGRFVGRERIDSDG 353
            VD+R+    WSN  L  R+L++P VF  Y+ VGD EGYLH + +  G+ VGR  +DS G
Sbjct: 309 AVDKRNGLESWSNSELTNRELTSPVVFKDYLVVGDFEGYLHFIDRASGKLVGRVEVDSSG 368

Query: 354 LRARPLVVGSMIYVYGNSGKLEALTI 379
           L ++PLV+   IYV    GK+  +T+
Sbjct: 369 LFSQPLVIDDKIYVQSRGGKVARITL 394



 Score = 45.8 bits (107), Expect = 2e-09
 Identities = 42/198 (21%), Positives = 78/198 (39%), Gaps = 18/198 (9%)

Query: 201 GKVVALDVSNGVPVWEQRVA--IPQGRSELERVVDIDGGLLLSGGTLYVASYQGRVAALD 258
           G+V A D + G  VW   ++    +G     +   +  G+  +   ++     G + A+D
Sbjct: 78  GEVAAYDEATGEQVWSLEISSWFKEGALSKNKGARLSSGITAARNKVFFGGESGLLGAVD 137

Query: 259 LETGRPLWQRDASSYAGVAQGFGS--VYVSLASGTVEGVDERSTTALWSNDS----LARR 312
            ETG  +W   A      A   G   V V  ++G +E  +      LW  +S    L  R
Sbjct: 138 AETGEMVWHVTAGGELLSAPTVGEDVVVVHTSTGALEAYNVDDGKQLWVYESKLPTLTLR 197

Query: 313 QLSAPEVFSSYVAVGDLEGYLHLLSQVDGRFV----------GRERIDSDGLRARPLVVG 362
              +    +    VG  +G + ++ + +G+            G E      +  +PL+VG
Sbjct: 198 GTGSAAYEAGGFFVGTADGKVAVVVKSNGQAAWEQPIYTPKGGNEFTRMADVDMKPLIVG 257

Query: 363 SMIYVYGNSGKLEALTIK 380
             IY    +G L ++ ++
Sbjct: 258 ENIYAVSYNGNLVSMELR 275